View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_low_49 (Length: 280)
Name: NF10080_low_49
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 37489277 - 37489013
Alignment:
| Q |
1 |
caatcagaggaaaagacactggaaaccatctgaagatatgagattttccattatggagggtgtaagtagcaccggcatagcaggacctctgtaagttaat |
100 |
Q |
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| T |
37489277 |
caatcagaggaaaagacactggaaaccatctgaagatatgagattttccattatggagggtgtaagtagcaccggcatagcaggacctctgtaagttaat |
37489178 |
T |
|
| Q |
101 |
tctgcaggtggagtcgaatcgtcgagtcttgttttaatctccgaaagaagtttacccttttgcttgaattaatgtgatggaaatgatattagctaggctt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37489177 |
tctgcaggtggagtagaatcgtcgagtcttgttttaatctccgaaagaagtttacccttttgcttgaattaatgtgatggaaatgatattagctaggctt |
37489078 |
T |
|
| Q |
201 |
cggccatctcaaaagtccaatccagaacattacgcctatgttaatttttcgaaccggcacctatg |
265 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37489077 |
cggccatctcaaaagtccaatcaagaacattacgcctatgttaattttctgaaccggcacctatg |
37489013 |
T |
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