View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10080_low_51 (Length: 269)

Name: NF10080_low_51
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10080_low_51
NF10080_low_51
[»] chr8 (2 HSPs)
chr8 (1-102)||(9264489-9264590)
chr8 (164-258)||(9264652-9264746)
[»] chr3 (8 HSPs)
chr3 (1-102)||(11776092-11776193)
chr3 (164-258)||(11776255-11776349)
chr3 (36-102)||(28091635-28091701)
chr3 (182-258)||(9743147-9743223)
chr3 (40-102)||(9743008-9743070)
chr3 (44-102)||(13528676-13528734)
chr3 (164-258)||(28091783-28091878)
chr3 (217-249)||(13528878-13528910)
[»] chr4 (4 HSPs)
chr4 (1-102)||(33471636-33471737)
chr4 (164-258)||(33471791-33471885)
chr4 (35-102)||(44775606-44775673)
chr4 (164-258)||(44775743-44775836)
[»] chr6 (1 HSPs)
chr6 (1-102)||(17350716-17350817)
[»] chr1 (2 HSPs)
chr1 (35-102)||(24622905-24622972)
chr1 (182-258)||(24623049-24623125)
[»] chr5 (1 HSPs)
chr5 (38-102)||(5180250-5180314)
[»] chr2 (6 HSPs)
chr2 (39-102)||(4571123-4571186)
chr2 (199-258)||(36770325-36770384)
chr2 (35-102)||(9746825-9746892)
chr2 (199-258)||(9746966-9747025)
chr2 (173-258)||(4570959-4571044)
chr2 (35-102)||(36770184-36770251)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 9264489 - 9264590
Alignment:
Q  1 cccaagaagcaaaagagtcaaacagacaaaaatggaggatcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcat 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9264489 cccaagaagcaaaagagtccaacagacaaaaatggaggatcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcat 9264588  T
Q  101 ga 102  Q
    ||    
T  9264589 ga 9264590  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 9264652 - 9264746
Alignment:
Q  164 aatgtaacatgttactaccctcagtagcagggtgtgtttttcatcttatcccaccttagaagtggtttaaggctacttaggaagtgtctctgctt 258  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  9264652 aatgtaacttgttactaccctcagtagcagggtgtgttttccatcttatcccaccttaggagtgatttaaggctacttaggaagtgtctcagctt 9264746  T

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Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 11776092 - 11776193
Alignment:
Q  1 cccaagaagcaaaagagtcaaacagacaaaaatggaggatcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcat 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11776092 cccaagaagcaaaagagtccaacagacaaaaatggaggatcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcat 11776191  T
Q  101 ga 102  Q
    ||    
T  11776192 ga 11776193  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 11776255 - 11776349
Alignment:
Q  164 aatgtaacatgttactaccctcagtagcagggtgtgtttttcatcttatcccaccttagaagtggtttaaggctacttaggaagtgtctctgctt 258  Q
    |||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11776255 aatgtaacttgttaccaccctcagtagcagggtgtgttttccatcttatcccaccttagaagtgatttaaggctacttaggaagtgtctctgctt 11776349  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 28091635 - 28091701
Alignment:
Q  36 aggatcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcatga 102  Q
    ||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  28091635 aggatcgaaaaatgagtgcattcacaccagtgctaagagtggcatatctaaagcttataaatcatga 28091701  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 9743147 - 9743223
Alignment:
Q  182 cctcagtagcagggtgtgtttttcatcttatcccaccttagaagtggtttaaggctacttaggaagtgtctctgctt 258  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| |||||||| || |||||    
T  9743147 cctcagtagcagggtgtgtttttcatcttatgcctccttagaagtggtttaaggttactaaggaagtgactttgctt 9743223  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 9743008 - 9743070
Alignment:
Q  40 tcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcatga 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||    
T  9743008 tcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagtatataaaacatga 9743070  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 13528676 - 13528734
Alignment:
Q  44 aaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcatga 102  Q
    |||||||||||||| |||||| |||||| |||||  |||||||||||||||||||||||    
T  13528676 aaaatgagtgcatttaaacccatgctaatagtggattatctaaagcttataaatcatga 13528734  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 28091783 - 28091878
Alignment:
Q  164 aatgtaacatgttactaccctcagtagcagggtgtgtttttcat-cttatcccaccttagaagtggtttaaggctacttaggaagtgtctctgctt 258  Q
    |||||||| ||||| |||||| |||||||||||||||||||| |  || ||   | |||||||||| ||| |||||||||||||||| || |||||    
T  28091783 aatgtaacctgttattacccttagtagcagggtgtgtttttcctgtttgtcattctttagaagtgggttatggctacttaggaagtgactttgctt 28091878  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 13528878 - 13528910
Alignment:
Q  217 ccttagaagtggtttaaggctacttaggaagtg 249  Q
    ||||||||||||||| |||||||||||||||||    
T  13528878 ccttagaagtggttttaggctacttaggaagtg 13528910  T

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Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 33471636 - 33471737
Alignment:
Q  1 cccaagaagcaaaagagtcaaacagacaaaaatggaggatcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcat 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33471636 cccaagaagcaaaagagtccaacagacaaaaatggaggatcggaaaatgagtgcattcaaacccgtgctaagagtgacatatctaaagcttataaatcat 33471735  T
Q  101 ga 102  Q
    ||    
T  33471736 ga 33471737  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 33471791 - 33471885
Alignment:
Q  164 aatgtaacatgttactaccctcagtagcagggtgtgtttttcatcttatcccaccttagaagtggtttaaggctacttaggaagtgtctctgctt 258  Q
    |||||||| |||||||| ||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33471791 aatgtaacttgttactatcctcaatagcagggtgtgttttccatcttatcccaccttagaagtgatttaaggctacttaggaagtgtctctgctt 33471885  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 44775606 - 44775673
Alignment:
Q  35 gaggatcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcatga 102  Q
    ||||||| |||| ||| |||||||||||||||||||||| || ||||||||| |||||||||||||||    
T  44775606 gaggatcagaaattgattgcattcaaacccgtgctaagaatgacatatctaaggcttataaatcatga 44775673  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 44775743 - 44775836
Alignment:
Q  164 aatgtaacatgttactaccctcagtagcagggtgtgtttttcatcttatcccaccttagaagtggtttaaggctacttaggaagtgtctctgctt 258  Q
    |||||||| |||||||| ||| |||||||| ||||||||| ||| ||||||  |||| |||||||||||||||||||| ||||||| || |||||    
T  44775743 aatgtaacctgttactatccttagtagcagagtgtgttttccattttatccttcctt-gaagtggtttaaggctactttggaagtgactttgctt 44775836  T

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Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 17350817 - 17350716
Alignment:
Q  1 cccaagaagcaaaagagtcaaacagacaaaaatggaggatcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcat 100  Q
    ||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17350817 cccaagaagcaaaagagtccaacagacaaaaaaggaggatcagaaaatgagtgcattcaaacccgtgctaagagtgacatatctaaagcttataaatcat 17350718  T
Q  101 ga 102  Q
    ||    
T  17350717 ga 17350716  T

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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 24622905 - 24622972
Alignment:
Q  35 gaggatcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcatga 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24622905 gaggatcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaaacatga 24622972  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 24623049 - 24623125
Alignment:
Q  182 cctcagtagcagggtgtgtttttcatcttatcccaccttagaagtggtttaaggctacttaggaagtgtctctgctt 258  Q
    ||||||||||| || |||||||||||||||| ||  |||||||||||||||||||||||||||||||| || |||||    
T  24623049 cctcagtagcaaggagtgtttttcatcttatgccttcttagaagtggtttaaggctacttaggaagtgactttgctt 24623125  T

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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 5180314 - 5180250
Alignment:
Q  38 gatcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcatga 102  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  5180314 gatcggaaaatgagtgcattcacacccgtgctaagagtggcatatttaaagcttataaatcatga 5180250  T

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Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 4571186 - 4571123
Alignment:
Q  39 atcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcatga 102  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  4571186 atcgaaaaatgagtgcattcaaactcgcgctaagagtggcatatctaaagcttataaatcatga 4571123  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 36770325 - 36770384
Alignment:
Q  199 gtttttcatcttatcccaccttagaagtggtttaaggctacttaggaagtgtctctgctt 258  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  36770325 gtttttcatcttatccctccttagaagtggtttaaggctacttaggaagtgactttgctt 36770384  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 9746825 - 9746892
Alignment:
Q  35 gaggatcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcatga 102  Q
    |||||||||||||| |||||||||| || ||||||||||||||||| || ||||| ||||||||||||    
T  9746825 gaggatcggaaaataagtgcattcacactcgtgctaagagtggcatttcaaaagcatataaatcatga 9746892  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 9746966 - 9747025
Alignment:
Q  199 gtttttcatcttatcccaccttagaagtggtttaaggctacttaggaagtgtctctgctt 258  Q
    ||||||||||| ||| | ||||||||||||||||||||||||||||||||| || |||||    
T  9746966 gtttttcatctcatcactccttagaagtggtttaaggctacttaggaagtgactttgctt 9747025  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 4571044 - 4570959
Alignment:
Q  173 tgttactaccctcagtagcagggtgtgtttttcatcttatcccaccttagaagtggtttaaggctacttaggaagtgtctctgctt 258  Q
    |||||||| ||| ||||||||  | |||||| ||| ||||||  ||||||||||||| ||||||||||||||||||| || |||||    
T  4571044 tgttactatccttagtagcagactttgttttccattttatccttccttagaagtggtctaaggctacttaggaagtgactttgctt 4570959  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 36770184 - 36770251
Alignment:
Q  35 gaggatcggaaaatgagtgcattcaaacccgtgctaagagtggcatatctaaagcttataaatcatga 102  Q
    |||||||| ||||| |||||||||| || ||||||||||||||||| || ||||| |||||| |||||    
T  36770184 gaggatcgaaaaataagtgcattcacactcgtgctaagagtggcatttcaaaagcctataaaacatga 36770251  T

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