View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_low_55 (Length: 254)
Name: NF10080_low_55
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 17880520 - 17880721
Alignment:
| Q |
18 |
gaaatagcgataataaagtagaatagaaattgcagaaaggtgtatactaatgaatggaaaggaaacagaaactcat--aattgacggattccctgccaag |
115 |
Q |
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| T |
17880520 |
gaaatagcgataataaagtagaatagaaattgcagaaaggtgtatactaatgaatggaaaggaaacagaaactcatgaaattgacggattccctgccaag |
17880619 |
T |
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| Q |
116 |
agatgtgatccttcagagtgcacaaactgcctctaccacaacaagcaaaatacctaaatgaataactcattctttctctcccctaattcttataactaaa |
215 |
Q |
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| T |
17880620 |
agatgtgatccttcagagtgcacaaactgcctctaccacaacaagcaaaatacctaaatgaataactctttcgttctctccgctaattcttataactaaa |
17880719 |
T |
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| Q |
216 |
ac |
217 |
Q |
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|| |
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| T |
17880720 |
ac |
17880721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 15047681 - 15047803
Alignment:
| Q |
94 |
aattgacggattccctgccaagagatgtgatccttcagagtgcacaaactgcctctaccacaacaagcaaaatacctaaatgaataactcattctttctc |
193 |
Q |
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|||||| ||||||||||| ||| | | || |||||||||||||| | ||||||||||||||||| | |||||| |||||||||| || | || ||||| |
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| T |
15047681 |
aattgatggattccctgc-aagggctatgctccttcagagtgcatacgctgcctctaccacaacaggaaaaataactaaatgaatgaccaactcattctc |
15047779 |
T |
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| Q |
194 |
tcccctaattcttataactaaaac |
217 |
Q |
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|||||||||||||||||||||||| |
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| T |
15047780 |
tcccctaattcttataactaaaac |
15047803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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