View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10080_low_56 (Length: 251)

Name: NF10080_low_56
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10080_low_56
NF10080_low_56
[»] chr7 (1 HSPs)
chr7 (46-251)||(47826105-47826310)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 46 - 251
Target Start/End: Original strand, 47826105 - 47826310
Alignment:
Q  46 atgctgtgtttcattttcataagctaagaactatggtataaaattatatgaaagatccatgatgtatcatagtctattataaatttgttattctgtgtta 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47826105 atgctgtgtttcattttcataagctaagaactatggtataaaattatatgaaagatccatgatgtatcatagtctattataaatttgttattctgcgtta 47826204  T
Q  146 tccacgctcgaagcgtagagataagacctgaatagaatttaaagttatggaatcatgaatttgtatataattgctaaattgatttaatcggttcgagtta 245  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47826205 tccacgctcgaagcgtagagataagacctgaatagaatttgaagttatggaatcatgaatttgtatataattgctaaattgatttaatcggttcgagtta 47826304  T
Q  246 aatttg 251  Q
    ||||||    
T  47826305 aatttg 47826310  T

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