View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10080_low_57 (Length: 250)

Name: NF10080_low_57
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10080_low_57
NF10080_low_57
[»] chr1 (3 HSPs)
chr1 (3-240)||(40982421-40982658)
chr1 (74-188)||(14268654-14268768)
chr1 (85-234)||(40970786-40970935)
[»] chr7 (1 HSPs)
chr7 (74-188)||(45485648-45485762)
[»] chr4 (8 HSPs)
chr4 (85-235)||(20461319-20461469)
chr4 (85-233)||(20430514-20430662)
chr4 (1-208)||(20277910-20278120)
chr4 (85-235)||(20475535-20475685)
chr4 (1-208)||(20449644-20449854)
chr4 (85-235)||(20442882-20443032)
chr4 (85-214)||(20439079-20439208)
chr4 (88-215)||(37065391-37065518)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 40982658 - 40982421
Alignment:
Q  3 taaacttcatacccatactacgacggaagatttgtttgacccctcgattaagcttcttcctactggtttgtttgaatttggagtgaaaatctttaccttc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  40982658 taaacttcatacccatactacgacggaagatttgtttgacccctcgattaagtttctttctactggtttgtttgaatttggagtgaaaatctttaccttc 40982559  T
Q  103 ttcaaattacttgagcgatttataatgtatcgggtaaattccaactcagtttgtacgttttgaattcctctaaattcaaatgtaatgagattgtttgaaa 202  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40982558 ttcaaattacttgagcgatttataatgtatcgggtaaagttcaactctttttgtacgttttgaattcctctaaattcaaatataatgagattgtttgaaa 40982459  T
Q  203 gacatgtaggagtttcggatggccccacccaacctatg 240  Q
    |||||||| |||||||||||||||||||||||||||||    
T  40982458 gacatgtaagagtttcggatggccccacccaacctatg 40982421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 14268768 - 14268654
Alignment:
Q  74 ttgaatttggagtgaaaatctttaccttcttcaaattacttgagcgatttataatgtatcgggtaaattccaactcagtttgtacgttttgaattcctct 173  Q
    |||||||||| |||||||| |||||||||||||| ||||||||  ||| |||||| ||||| | ||| |||||||||||||||| ||||||||||||| |    
T  14268768 ttgaatttggtgtgaaaatttttaccttcttcaacttacttgaatgatctataatatatcgtgcaaagtccaactcagtttgtatgttttgaattccttt 14268669  T
Q  174 aaattcaaatgtaat 188  Q
    |||||||||||||||    
T  14268668 aaattcaaatgtaat 14268654  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 85 - 234
Target Start/End: Complemental strand, 40970935 - 40970786
Alignment:
Q  85 gtgaaaatctttaccttcttcaaattacttgagcgatttataatgtatcgggtaaattccaactcagtttgtacgttttgaattcctctaaattcaaatg 184  Q
    |||||||||||||||||||| || ||| ||||| |||| ||||| ||||| ||||| || |||||| | ||||   ||||||| ||| |||||||||||     
T  40970935 gtgaaaatctttaccttctttaacttagttgagtgattaataatatatcgtgtaaagtctaactcattctgtattctttgaatccctttaaattcaaatt 40970836  T
Q  185 taatgagattgtttgaaagacatgtaggagtttcggatggccccacccaa 234  Q
    ||| |||| |||||||||||||||| |||||| |||||||| ||||||||    
T  40970835 taaggagactgtttgaaagacatgttggagttacggatggctccacccaa 40970786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 45485762 - 45485648
Alignment:
Q  74 ttgaatttggagtgaaaatctttaccttcttcaaattacttgagcgatttataatgtatcgggtaaattccaactcagtttgtacgttttgaattcctct 173  Q
    |||||||||| |||||||| |||||||||||||| ||||||||  ||| |||||| ||||| | ||| |||||||||||||||| |||||||||| || |    
T  45485762 ttgaatttggtgtgaaaatttttaccttcttcaatttacttgaatgatctataatatatcgtgcaaagtccaactcagtttgtatgttttgaatttcttt 45485663  T
Q  174 aaattcaaatgtaat 188  Q
    |||||||||||||||    
T  45485662 aaattcaaatgtaat 45485648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 235
Target Start/End: Original strand, 20461319 - 20461469
Alignment:
Q  85 gtgaaaatctttaccttcttcaaattacttgagcgatttataatgtatcgggtaaattccaactcagtttgtacgttttgaattcctctaaattcaaatg 184  Q
    |||||||||||||||||||  || ||| ||||| || ||| ||| ||||| ||||| ||||||||||||| || || |||||||||| ||||||||||||    
T  20461319 gtgaaaatctttaccttctctaacttatttgagtgacttacaatatatcgcgtaaagtccaactcagtttttatgtcttgaattcctttaaattcaaatg 20461418  T
Q  185 taatgagattgtttgaaagacatgtaggagtttcggatggccccacccaac 235  Q
    |||||||| || ||| ||||||||| |||||  | |||||| |||||||||    
T  20461419 taatgagactggttgtaagacatgtcggagtcactgatggctccacccaac 20461469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 233
Target Start/End: Original strand, 20430514 - 20430662
Alignment:
Q  85 gtgaaaatctttaccttcttcaaattacttgagcgatttataatgtatcgggtaaattccaactcagtttgtacgttttgaattcctctaaattcaaatg 184  Q
    |||||||||||||||||||  || ||| ||||| || ||| ||| ||||| ||||| |||||||||||||  | ||||||||||||| ||||||||||||    
T  20430514 gtgaaaatctttaccttctgtaacttagttgagtgacttacaatatatcgcgtaaagtccaactcagttttaatgttttgaattcctttaaattcaaatg 20430613  T
Q  185 taatgagattgtttgaaagacatgtaggagtttcggatggccccaccca 233  Q
    |||||||| || ||| ||||||||  |||||| | |||||| |||||||    
T  20430614 taatgagactggttgtaagacatgccggagttactgatggctccaccca 20430662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 20277910 - 20278120
Alignment:
Q  1 tgtaaacttcatacccatactacgacggaagatttgtttgacccctcgattaagcttcttcctactggt---ttgtttgaatttggagtgaaaatcttta 97  Q
    |||||| ||| |||||||||||  ||||| ||||| |||||||||| |  ||| ||| || |||||  |   || |||||| | || |||||||||||||    
T  20277910 tgtaaaattcgtacccatactagtacggaggatttctttgaccccttgcgtaaacttttttctactcttcttttctttgaactgggtgtgaaaatcttta 20278009  T
Q  98 ccttcttcaaattacttgagcgatttataatgtatcgggtaaattccaactcagtttgtacgttttgaattcctctaaattcaaatgtaatgagattgtt 197  Q
    ||||||  || ||||||||| |||||||||| ||||| ||||| ||||  ||||||| || ||||||||||||   ||||||||||||||||||| || |    
T  20278010 ccttctgtaacttacttgagtgatttataatatatcgcgtaaagtccagatcagtttttatgttttgaattccaacaaattcaaatgtaatgagactgct 20278109  T
Q  198 tgaaagacatg 208  Q
    || ||||||||    
T  20278110 tgtaagacatg 20278120  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 235
Target Start/End: Original strand, 20475535 - 20475685
Alignment:
Q  85 gtgaaaatctttaccttcttcaaattacttgagcgatttataatgtatcgggtaaattccaactcagtttgtacgttttgaattcctctaaattcaaatg 184  Q
    |||||||||||||||||||  ||  |||||||| || ||| ||| ||||| ||||| ||||||||||||| || || |||||||||| ||||||||||||    
T  20475535 gtgaaaatctttaccttctctaacctacttgagtgacttacaatttatcgcgtaaagtccaactcagtttttatgtcttgaattcctttaaattcaaatg 20475634  T
Q  185 taatgagattgtttgaaagacatgtaggagtttcggatggccccacccaac 235  Q
    |||||||| || ||  ||||||||  |||||  | |||||| |||||||||    
T  20475635 taatgagactggttataagacatgccggagtcaccgatggctccacccaac 20475685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 20449644 - 20449854
Alignment:
Q  1 tgtaaacttcatacccatactacgacggaagatttgtttgacccctcgattaagcttcttcctactggt---ttgtttgaatttggagtgaaaatcttta 97  Q
    |||||| ||| |||||||||||  ||||| ||||| |||||||||| |  ||| ||| || |||||  |   || |||||| | || |||||||||||||    
T  20449644 tgtaaaattcgtacccatactagtacggaggatttctttgaccccttgcgtaaacttttttctactcttcttttctttgaagtgggtgtgaaaatcttta 20449743  T
Q  98 ccttcttcaaattacttgagcgatttataatgtatcgggtaaattccaactcagtttgtacgttttgaattcctctaaattcaaatgtaatgagattgtt 197  Q
    ||||||  |  ||||||||| || ||| ||| ||||| ||||| ||||||||||||| || ||||||||||||   ||||||||||| ||||||| ||||    
T  20449744 ccttctctagcttacttgagtgacttacaatatatcgtgtaaagtccaactcagtttttatgttttgaattccaacaaattcaaatgaaatgagactgtt 20449843  T
Q  198 tgaaagacatg 208  Q
     | ||||||||    
T  20449844 agtaagacatg 20449854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 235
Target Start/End: Original strand, 20442882 - 20443032
Alignment:
Q  85 gtgaaaatctttaccttcttcaaattacttgagcgatttataatgtatcgggtaaattccaactcagtttgtacgttttgaattcctctaaattcaaatg 184  Q
    ||||||||||||||||||   || ||||||||| || ||| ||| ||||| ||||| ||||  |||||||  | ||||||||||||| ||||||||||||    
T  20442882 gtgaaaatctttaccttcagtaacttacttgagtgacttacaatatatcgcgtaaagtccaggtcagttttaatgttttgaattcctttaaattcaaatg 20442981  T
Q  185 taatgagattgtttgaaagacatgtaggagtttcggatggccccacccaac 235  Q
    |||||||| |  ||| ||||||||  |||||| |  ||||| |||||||||    
T  20442982 taatgagagttgttgcaagacatgccggagttactaatggctccacccaac 20443032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 214
Target Start/End: Original strand, 20439079 - 20439208
Alignment:
Q  85 gtgaaaatctttaccttcttcaaattacttgagcgatttataatgtatcgggtaaattccaactcagtttgtacgttttgaattcctctaaattcaaatg 184  Q
    ||||||||||||||||| |  || ||||||||| || ||| ||| ||||| ||||| ||||| ||||||| || ||||||||||||   |||||||||||    
T  20439079 gtgaaaatctttaccttttgtaacttacttgagtgacttacaatatatcgcgtaaagtccaattcagtttttatgttttgaattccaacaaattcaaatg 20439178  T
Q  185 taatgagattgtttgaaagacatgtaggag 214  Q
    |||||||| || ||  ||||||||| ||||    
T  20439179 taatgagactgcttctaagacatgtgggag 20439208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 215
Target Start/End: Original strand, 37065391 - 37065518
Alignment:
Q  88 aaaatctttaccttcttcaaattacttgagcgatttataatgtatcgggtaaattccaactcagtttgtacgttttgaattcctctaaattcaaatgtaa 187  Q
    |||||||| |||||||  || ||||||||||| | || ||||||| | ||||| |||| ||||| || ||  |||||||||||| |||||||||| ||||    
T  37065391 aaaatcttgaccttctctaatttacttgagcggtataaaatgtattgcgtaaaatccacctcagcttttatattttgaattcctgtaaattcaaacgtaa 37065490  T
Q  188 tgagattgtttgaaagacatgtaggagt 215  Q
    | | | |  ||||||||||||| |||||    
T  37065491 ttaaactagttgaaagacatgtcggagt 37065518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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