View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_low_60 (Length: 249)
Name: NF10080_low_60
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_60 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 1963217 - 1962981
Alignment:
| Q |
1 |
atgtgaatcagatttgcaatcagcttggactttgattaaggaaggagttccaacaacccacccttatgcacatgttattgacctaattatttggtttatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||| ||||||||||||||| |
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| T |
1963217 |
atgtgaatcagatttgcaatcagcttggactttgattaaggaaggagttccaacaatccacccttatacacatgttattggcctcattatttggtttatt |
1963118 |
T |
|
| Q |
101 |
ggttatctttggctcttgtctttccatcattccttgagggaagttcatagatgtgcgaatcaactagcgatatacaaagcaatattgaagggtgatgcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||| ||||||| |||| |
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| T |
1963117 |
ggttatctttggctcttgtctttccatcattccttgagggaagttaatagatgtgcgaatcaattagcgatatacaaagcaagattggagggtgacgcaa |
1963018 |
T |
|
| Q |
201 |
ttgcttggagttaatgttcaactcctttttcgactac |
237 |
Q |
| |
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||||||||||| |||||||||| |||||||||||||| |
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| T |
1963017 |
ttgcttggagtcaatgttcaacacctttttcgactac |
1962981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4270017 - 4269781
Alignment:
| Q |
1 |
atgtgaatcagatttgcaatcagcttggactttgattaaggaaggagttccaacaacccacccttatgcacatgttattgacctaattatttggtttatt |
100 |
Q |
| |
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|||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||| |||||| |||||||||||| |||| | |||||| |
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| T |
4270017 |
atgtgaatcagattgccaatcagctttaactttgattaaggaaggagttccgacaactcacccctatgcatttgttattgacctcattaagagatttatt |
4269918 |
T |
|
| Q |
101 |
ggttatctttggctcttgtctttccatcattccttgagggaagttcatagatgtgcgaatcaactagcgatatacaaagcaatattgaagggtgatgcaa |
200 |
Q |
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| T |
4269917 |
gattatccttggcttttgtctttccatcattcctcgagggaaggtaatagtaatgcggattggttagcgaaatacatagcaagattggaaggtgattcga |
4269818 |
T |
|
| Q |
201 |
ttgcttggagttaatgttcaactcctttttcgactac |
237 |
Q |
| |
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|||||||||| |||||| |||||||| |||||||||| |
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| T |
4269817 |
ttgcttggaggtaatgtccaactcctctttcgactac |
4269781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 22081697 - 22081460
Alignment:
| Q |
1 |
atgtgaatcagatttgcaatcagcttggactttgattaaggaaggagttccaacaacccacccttatgcacatgttattgacctaatt-atttggtttat |
99 |
Q |
| |
|
||||||||| |||| |||||||||| |||||||||||||||||||||||| ||||| ||| | ||||||| |||||||||||| ||| | | ||||| |
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| T |
22081697 |
atgtgaatctgattgtcaatcagctttgactttgattaaggaaggagttccgacaactcactcatatgcacctgttattgacctcattcaagagatttat |
22081598 |
T |
|
| Q |
100 |
tggttatctttggctcttgtctttccatcattccttgagggaagttcatagatgtgcgaatcaactagcgatatacaaagcaatattgaagggtgatgca |
199 |
Q |
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| T |
22081597 |
ttattatccttggcttttgactttccatcattcgttgagggaaggtaatatctgtgcagattagttagcgaaatacatagcaagattagaggatgactca |
22081498 |
T |
|
| Q |
200 |
attgcttggagttaatgttcaactcctttttcgactac |
237 |
Q |
| |
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|| |||||||| |||||| |||| || |||||||||| |
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| T |
22081497 |
atcgcttggaggcaatgttaaacttctctttcgactac |
22081460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 1583020 - 1583162
Alignment:
| Q |
1 |
atgtgaatcagatttgcaatcagcttggactttgattaaggaaggagttccaacaacccacccttatgcacatgttattgacctaattatttggtttatt |
100 |
Q |
| |
|
|||| ||||||||| || || |||| |||||||||||||| | ||||| ||||| |||| |||||| | |||||||||| |||| | |||||| |
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| T |
1583020 |
atgtaaatcagattatcagtcggctttgactttgattaagggacgagttatgacaactcacctctatgcatctattattgacctcattaagagatttatt |
1583119 |
T |
|
| Q |
101 |
ggttatctttggctcttgtctttccatcattccttgagggaag |
143 |
Q |
| |
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| T |
1583120 |
gattatccttggctattgactttccatcattccttgagggaag |
1583162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 19224359 - 19224485
Alignment:
| Q |
31 |
tttgattaaggaaggagttccaacaacccacccttatgcacatgttattgacctaattatttggtttattggttatctttggctcttgtctttccatcat |
130 |
Q |
| |
|
||||||||||||| ||||| | ||||| ||| ||||||||| |||||||||||| ||| ||||||||| ||| | |||||||||||||||||||||| |
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| T |
19224359 |
tttgattaaggaaagagtttcgacaactcactcttatgcacctgttattgacctcattgagaggtttattgattaaccttggctcttgtctttccatcat |
19224458 |
T |
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| Q |
131 |
tccttgagggaagttcatagatgtgcg |
157 |
Q |
| |
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||||||||||||| | |||| |||||| |
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| T |
19224459 |
tccttgagggaaggtaatagttgtgcg |
19224485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 39334799 - 39334711
Alignment:
| Q |
2 |
tgtgaatcagatttgcaatcagcttggactttgatt-aaggaaggagttccaacaacccacccttatgcacatgttattgacctaatta |
89 |
Q |
| |
|
||||||||| ||| |||||| ||| |||||||||| |||||||||||||| || | || |||||||||| |||||||||||| |||| |
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| T |
39334799 |
tgtgaatcaaattaccaatcaactttgactttgatttaaggaaggagttccggcatctcatccttatgcacttgttattgacctcatta |
39334711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 51272969 - 51272911
Alignment:
| Q |
4 |
tgaatcagatttgcaatcagcttggactttgattaaggaaggagttccaacaacccacc |
62 |
Q |
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||||||||||| ||||| |||| ||||||||| |||||| ||||||||||||| |||| |
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| T |
51272969 |
tgaatcagattgtcaatcggctttgactttgatcaaggaatgagttccaacaactcacc |
51272911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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