View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10080_low_62 (Length: 245)

Name: NF10080_low_62
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10080_low_62
NF10080_low_62
[»] chr8 (2 HSPs)
chr8 (91-231)||(9264224-9264367)
chr8 (22-95)||(9264402-9264475)
[»] chr3 (2 HSPs)
chr3 (91-231)||(11775827-11775970)
chr3 (22-95)||(11776005-11776078)
[»] chr4 (2 HSPs)
chr4 (91-194)||(33471408-33471514)
chr4 (22-95)||(33471549-33471622)
[»] chr6 (2 HSPs)
chr6 (22-98)||(17350831-17350907)
chr6 (197-231)||(17350968-17351002)
[»] chr2 (2 HSPs)
chr2 (97-231)||(9746508-9746645)
chr2 (97-231)||(36769867-36770004)
[»] chr7 (1 HSPs)
chr7 (178-231)||(4183316-4183369)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 91 - 231
Target Start/End: Complemental strand, 9264367 - 9264224
Alignment:
Q  91 tcagagtcttcatctccccagaacctgctcaaggctttgccatctttcatacaggcaactgatttatttttaaggccatca---atttgcacctttctct 187  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || | ||||||   ||||||||||||||||    
T  9264367 tcagtgtcttcatctccccagaacctgctcaaggctttaccatctttcatacaggcaactgatttatttataggaccatcattaatttgcacctttctct 9264268  T
Q  188 tgtcttgccccaaaatctcatcataagtggtgatgggtgaaatg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9264267 tgtcttgccccaaaatctcatcataagtggtgatgggtgaaatg 9264224  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 9264475 - 9264402
Alignment:
Q  22 gtttgctttaccacatcataaggtgagatcaggtacttagtagcatctggaaacttggctttattcacttcaga 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  9264475 gtttgctttaccacatcataaggtgagatcaggtacttagtagcatatggagacttggctttattcacttcaga 9264402  T

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Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 91 - 231
Target Start/End: Complemental strand, 11775970 - 11775827
Alignment:
Q  91 tcagagtcttcatctccccagaacctgctcaaggctttgccatctttcatacaggcaactgatttatttttaaggccatcaat---ttgcacctttctct 187  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| || | ||||||||   ||||||||||||||    
T  11775970 tcagtgtcttcatctccccagaacctgctcaaggctttaccatctttcatacaggcaactgatatatttataggaccatcaataatttgcacctttctct 11775871  T
Q  188 tgtcttgccccaaaatctcatcataagtggtgatgggtgaaatg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11775870 tgtcttgccccaaaatctcatcataagtggtgatgggtgaaatg 11775827  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 11776078 - 11776005
Alignment:
Q  22 gtttgctttaccacatcataaggtgagatcaggtacttagtagcatctggaaacttggctttattcacttcaga 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  11776078 gtttgctttaccacatcataaggtgagatcaggtacttagtagcatatggagacttggctttattcacttcaga 11776005  T

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Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 33471514 - 33471408
Alignment:
Q  91 tcagagtcttcatctccccagaacctgctcaaggctttgccatctttcatacaggcaactgatttatttttaaggccatc---aatttgcacctttctct 187  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||   |||||||||||||||||    
T  33471514 tcagtgtcttcatctccccagaacctgctcaaggctttaccatctttcatacaggcaactgatttatttatagggccatcagtaatttgcacctttctct 33471415  T
Q  188 tgtcttg 194  Q
    |||||||    
T  33471414 tgtcttg 33471408  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 33471622 - 33471549
Alignment:
Q  22 gtttgctttaccacatcataaggtgagatcaggtacttagtagcatctggaaacttggctttattcacttcaga 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33471622 gtttgctttaccacatcataaggtgagatcaggtacttagtagcatctggaaacttgactttattcacttcaga 33471549  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 17350831 - 17350907
Alignment:
Q  22 gtttgctttaccacatcataaggtgagatcaggtacttagtagcatctggaaacttggctttattcacttcagagtc 98  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17350831 gtttgctttaccacatcataaggtgagatcaggtacttagcagcatctggaaacttggctttattcacttcagagtc 17350907  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 17350968 - 17351002
Alignment:
Q  197 ccaaaatctcatcataagtggtgatgggtgaaatg 231  Q
    |||||||||||||||||||||||||||||||||||    
T  17350968 ccaaaatctcatcataagtggtgatgggtgaaatg 17351002  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 231
Target Start/End: Complemental strand, 9746645 - 9746508
Alignment:
Q  97 tcttcatctccccagaacctgctcaaggctttgccatctttcatacaggcaactgatttatttttaaggccatca---atttgcacctttctcttgtctt 193  Q
    |||||||| ||||| ||| |||||||| |||| ||||||  || ||| ||| |||||||||||||| | ||| ||   |||||||||||| |||||||||    
T  9746645 tcttcatcaccccataacttgctcaagactttaccatctcccaaacatgcagctgatttatttttaggaccagcagtaatttgcacctttttcttgtctt 9746546  T
Q  194 gccccaaaatctcatcataagtggtgatgggtgaaatg 231  Q
    |||| || |||||||||| ||||||||| |||||||||    
T  9746545 gccctaatatctcatcattagtggtgataggtgaaatg 9746508  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 231
Target Start/End: Complemental strand, 36770004 - 36769867
Alignment:
Q  97 tcttcatctccccagaacctgctcaaggctttgccatctttcatacaggcaactgatttatttttaaggccatca---atttgcacctttctcttgtctt 193  Q
    ||||| || ||||| ||| |||||||| |||| |||||| | | ||| ||| |||||||||||||| | ||| ||   ||||||||||||||||||||||    
T  36770004 tcttcctcaccccataacttgctcaagactttaccatctcttaaacatgcagctgatttatttttaggaccagcagtaatttgcacctttctcttgtctt 36769905  T
Q  194 gccccaaaatctcatcataagtggtgatgggtgaaatg 231  Q
    |||| || |||||||||| ||||||||| |||||||||    
T  36769904 gccctaatatctcatcattagtggtgataggtgaaatg 36769867  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 4183316 - 4183369
Alignment:
Q  178 acctttctcttgtcttgccccaaaatctcatcataagtggtgatgggtgaaatg 231  Q
    ||||||||||| ||| |||| ||||||||||||| ||| |||||||| ||||||    
T  4183316 acctttctcttatctagccctaaaatctcatcattagtagtgatgggggaaatg 4183369  T

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