View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_low_68 (Length: 241)
Name: NF10080_low_68
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_68 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 1963426 - 1963204
Alignment:
| Q |
18 |
aggtaccacgtttggtagcttggaaatctctaataggtgcaactgttaaattaaatgttgatggtagctctattggtaatccgggtcgatatgggttcag |
117 |
Q |
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| T |
1963426 |
aggtaccacgtttggtagcttggaaatctctaataggtgcaattgttaaattaaatgttgatggtagctctattggtaatccgggttgatatgggttcag |
1963327 |
T |
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| Q |
118 |
aggtttaattagagacactaatggtaattggttattgtgtttcaccagcaattgtggtattactaccaatatgaatgcatagctttgaataatggctttc |
217 |
Q |
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| T |
1963326 |
aggtttaattagagacactaatggtaattggttattgtgtttcgccagcaattgtggtattactaccaatatgaatgcataactttgaataatggctttc |
1963227 |
T |
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| Q |
218 |
aacatgttgaatgtgaatcagatt |
241 |
Q |
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| T |
1963226 |
-acatgttgaatgtgaatcagatt |
1963204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 22081934 - 22081755
Alignment:
| Q |
22 |
accacgtttggtagcttggaaatctctaataggtgcaactgttaaattaaatgttgatggtagctctattggtaatccgggtcgatatgggttcagaggt |
121 |
Q |
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| T |
22081934 |
accacgtttggtagcttggaaacctccaataggtgtagctgttgaattaaatgtggatggtagctctcttggtaatcttggtcgctctgggtttagaggt |
22081835 |
T |
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| Q |
122 |
ttaattagagacactaatggtaattggttattgtgtttcaccagcaattgtggtattactaccaatatgaatgcatagct |
201 |
Q |
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| T |
22081834 |
taaattagagacgctgatggcaattggttattcagtttctctgccagttgtggtattactaccaatatgaatgcagagct |
22081755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 1582996 - 1583033
Alignment:
| Q |
204 |
gaataatggctttcaacatgttgaatgtgaatcagatt |
241 |
Q |
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| T |
1582996 |
gaataatggctttcgacatgttgaatgtaaatcagatt |
1583033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 11324432 - 11324592
Alignment:
| Q |
22 |
accacgtttggtagcttggaaatctctaataggtgcaactgttaaattaaatgttgatggtagctctattggtaatccgggtcgatatgggttcagaggt |
121 |
Q |
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| T |
11324432 |
accaagtttggtagcttggaaacctccattaggtgcaactattaaattaaatgttgatggtagttatcttggtaatccggatcgctctgggtttagatat |
11324531 |
T |
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| Q |
122 |
ttaattagagacactaatggtaattggttattgtgtttcaccagcaattgtggtattacta |
182 |
Q |
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| T |
11324532 |
ttaattaaagacactaacggtaattggttattcggtttctctagcagttgtggtattacta |
11324592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 19224188 - 19224264
Alignment:
| Q |
118 |
aggtttaattagagacactaatggtaattggttattgtgtttcaccagcaattgtggtattactaccaatatgaatg |
194 |
Q |
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| T |
19224188 |
aggtttaatttgagacattgatggtaattggttattgggtttccccagcaattatgatattactatcaatatgaatg |
19224264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 39335022 - 39334905
Alignment:
| Q |
28 |
tttggtagcttggaaatctctaataggtgcaactgttaaattaaatgttgatggtagctctattggtaatccgggtcgatatgggttcagaggtttaatt |
127 |
Q |
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| T |
39335022 |
tttggtatcttggaaacctcaagtaagtgcaacggttaaattaaatattgaaggtagctctcttgataatctagatcgctat-ggttcaaaggcttaatt |
39334924 |
T |
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| Q |
128 |
agagacactaatggtaatt |
146 |
Q |
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| T |
39334923 |
agatacactaatggtaatt |
39334905 |
T |
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