View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10080_low_68 (Length: 241)

Name: NF10080_low_68
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10080_low_68
NF10080_low_68
[»] chr6 (1 HSPs)
chr6 (18-241)||(1963204-1963426)
[»] chr5 (2 HSPs)
chr5 (22-201)||(22081755-22081934)
chr5 (204-241)||(1582996-1583033)
[»] chr3 (1 HSPs)
chr3 (22-182)||(11324432-11324592)
[»] chr7 (1 HSPs)
chr7 (118-194)||(19224188-19224264)
[»] chr4 (1 HSPs)
chr4 (28-146)||(39334905-39335022)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 1963426 - 1963204
Alignment:
18 aggtaccacgtttggtagcttggaaatctctaataggtgcaactgttaaattaaatgttgatggtagctctattggtaatccgggtcgatatgggttcag 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
1963426 aggtaccacgtttggtagcttggaaatctctaataggtgcaattgttaaattaaatgttgatggtagctctattggtaatccgggttgatatgggttcag 1963327  T
118 aggtttaattagagacactaatggtaattggttattgtgtttcaccagcaattgtggtattactaccaatatgaatgcatagctttgaataatggctttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
1963326 aggtttaattagagacactaatggtaattggttattgtgtttcgccagcaattgtggtattactaccaatatgaatgcataactttgaataatggctttc 1963227  T
218 aacatgttgaatgtgaatcagatt 241  Q
     |||||||||||||||||||||||    
1963226 -acatgttgaatgtgaatcagatt 1963204  T

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Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 22081934 - 22081755
Alignment:
22 accacgtttggtagcttggaaatctctaataggtgcaactgttaaattaaatgttgatggtagctctattggtaatccgggtcgatatgggttcagaggt 121  Q
    |||||||||||||||||||||| ||| |||||||| | ||||| |||||||||| |||||||||||| |||||||||  ||||| | |||||| ||||||    
22081934 accacgtttggtagcttggaaacctccaataggtgtagctgttgaattaaatgtggatggtagctctcttggtaatcttggtcgctctgggtttagaggt 22081835  T
122 ttaattagagacactaatggtaattggttattgtgtttcaccagcaattgtggtattactaccaatatgaatgcatagct 201  Q
    | |||||||||| || |||| |||||||||||  ||||| |   || |||||||||||||||||||||||||||| ||||    
22081834 taaattagagacgctgatggcaattggttattcagtttctctgccagttgtggtattactaccaatatgaatgcagagct 22081755  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 1582996 - 1583033
Alignment:
204 gaataatggctttcaacatgttgaatgtgaatcagatt 241  Q
    |||||||||||||| ||||||||||||| |||||||||    
1582996 gaataatggctttcgacatgttgaatgtaaatcagatt 1583033  T

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Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 11324432 - 11324592
Alignment:
22 accacgtttggtagcttggaaatctctaataggtgcaactgttaaattaaatgttgatggtagctctattggtaatccgggtcgatatgggttcagaggt 121  Q
    |||| ||||||||||||||||| ||| | ||||||||||| |||||||||||||||||||||| | | |||||||||||| ||| | |||||| |||  |    
11324432 accaagtttggtagcttggaaacctccattaggtgcaactattaaattaaatgttgatggtagttatcttggtaatccggatcgctctgggtttagatat 11324531  T
122 ttaattagagacactaatggtaattggttattgtgtttcaccagcaattgtggtattacta 182  Q
    ||||||| ||||||||| ||||||||||||||  ||||| | |||| ||||||||||||||    
11324532 ttaattaaagacactaacggtaattggttattcggtttctctagcagttgtggtattacta 11324592  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 19224188 - 19224264
Alignment:
118 aggtttaattagagacactaatggtaattggttattgtgtttcaccagcaattgtggtattactaccaatatgaatg 194  Q
    |||||||||| |||||| | ||||||||||||||||| ||||| ||||||||| || |||||||| |||||||||||    
19224188 aggtttaatttgagacattgatggtaattggttattgggtttccccagcaattatgatattactatcaatatgaatg 19224264  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 39335022 - 39334905
Alignment:
28 tttggtagcttggaaatctctaataggtgcaactgttaaattaaatgttgatggtagctctattggtaatccgggtcgatatgggttcagaggtttaatt 127  Q
    ||||||| |||||||| ||| | || ||||||| |||||||||||| |||| ||||||||| ||| |||||  | ||| ||| |||||| ||| ||||||    
39335022 tttggtatcttggaaacctcaagtaagtgcaacggttaaattaaatattgaaggtagctctcttgataatctagatcgctat-ggttcaaaggcttaatt 39334924  T
128 agagacactaatggtaatt 146  Q
    ||| |||||||||||||||    
39334923 agatacactaatggtaatt 39334905  T

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