View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10080_low_77 (Length: 226)

Name: NF10080_low_77
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10080_low_77
NF10080_low_77
[»] chr2 (1 HSPs)
chr2 (26-226)||(9362183-9362383)
[»] chr1 (1 HSPs)
chr1 (27-92)||(45237690-45237755)
[»] chr5 (1 HSPs)
chr5 (26-92)||(12874059-12874125)
[»] chr6 (3 HSPs)
chr6 (26-92)||(27771207-27771273)
chr6 (37-92)||(34416745-34416800)
chr6 (26-92)||(27118760-27118826)
[»] chr8 (2 HSPs)
chr8 (26-92)||(8813556-8813622)
chr8 (27-72)||(16468553-16468598)
[»] chr7 (3 HSPs)
chr7 (37-92)||(14591865-14591920)
chr7 (37-92)||(16011456-16011511)
chr7 (26-54)||(37446804-37446832)
[»] chr4 (1 HSPs)
chr4 (26-92)||(54568374-54568440)


Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 26 - 226
Target Start/End: Original strand, 9362183 - 9362383
Alignment:
Q  26 gttgcgacttattcgtttaacttcttctcagaatgacccgtggggtagcacgggtcaacagtctagtgagctataacgaatatatggcccgagatagaac 125  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  9362183 gttgcgacttattcgtttaacttcttctcagaaggacccgtggggtagttcgggtcaacagtctagtgggctataacgcatatatggcccgagatagaac 9362282  T
Q  126 ttctcatcaaatatcaaattaagctgaattagaatgaaagaaacctaaagcctggagatagaggaatcacattcttagaaagaaagaaagctaaaactta 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9362283 ttctcatcaaatatcaaattaagctgaattagaatgaaagaaacctaaagcctggagatagaggaatcacattcttagaaagaaagaaacctaaaactta 9362382  T
Q  226 a 226  Q
    |    
T  9362383 a 9362383  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 45237690 - 45237755
Alignment:
Q  27 ttgcgacttattcgtttaacttcttctcagaatgacccgtggggtagcacgggtcaacagtctagt 92  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||    
T  45237690 ttgcgacttattcgtttaacttcttctcagaaggacccgtgcggtagaacgggtcaacagtctagt 45237755  T

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Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 12874059 - 12874125
Alignment:
Q  26 gttgcgacttattcgtttaacttcttctcagaatgacccgtggggtagcacgggtcaacagtctagt 92  Q
    ||||||||||||||||||||||||||||| | | |||||||| ||||||||||||||| ||||||||    
T  12874059 gttgcgacttattcgtttaacttcttctcggtaggacccgtgcggtagcacgggtcaagagtctagt 12874125  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 27771207 - 27771273
Alignment:
Q  26 gttgcgacttattcgtttaacttcttctcagaatgacccgtggggtagcacgggtcaacagtctagt 92  Q
    ||||||||||||||||||||||||||||  | | |||||||| ||||||||||||||| ||||||||    
T  27771207 gttgcgacttattcgtttaacttcttcttggtaggacccgtgcggtagcacgggtcaagagtctagt 27771273  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 34416800 - 34416745
Alignment:
Q  37 ttcgtttaacttcttctcagaatgacccgtggggtagcacgggtcaacagtctagt 92  Q
    ||||||||||||||||||||   |||||||| ||||||||||||||| ||||||||    
T  34416800 ttcgtttaacttcttctcagttggacccgtgcggtagcacgggtcaagagtctagt 34416745  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 27118826 - 27118760
Alignment:
Q  26 gttgcgacttattcgtttaacttcttctcagaatgacccgtggggtagcacgggtcaacagtctagt 92  Q
    ||||||||| ||||||||||||||||||| | ||||||||||   | ||||||| ||| ||||||||    
T  27118826 gttgcgactcattcgtttaacttcttctcggtatgacccgtgctatcgcacgggacaagagtctagt 27118760  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 8813556 - 8813622
Alignment:
Q  26 gttgcgacttattcgtttaacttcttctcagaatgacccgtggggtagcacgggtcaacagtctagt 92  Q
    ||||||||||||||||||||||||||||| | | |||| ||| | ||||||||||||| || |||||    
T  8813556 gttgcgacttattcgtttaacttcttctcggtaggacctgtgcgatagcacgggtcaagaggctagt 8813622  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 16468598 - 16468553
Alignment:
Q  27 ttgcgacttattcgtttaacttcttctcagaatgacccgtggggta 72  Q
    |||| |||||||||||||| |||||||||||| |||||||| ||||    
T  16468598 ttgcaacttattcgtttaaattcttctcagaaggacccgtgcggta 16468553  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 14591865 - 14591920
Alignment:
Q  37 ttcgtttaacttcttctcagaatgacccgtggggtagcacgggtcaacagtctagt 92  Q
    ||||||||||||||||| ||   |||||||| ||||||||||||||| ||||||||    
T  14591865 ttcgtttaacttcttcttagttggacccgtgcggtagcacgggtcaagagtctagt 14591920  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 16011456 - 16011511
Alignment:
Q  37 ttcgtttaacttcttctcagaatgacccgtggggtagcacgggtcaacagtctagt 92  Q
    ||||||||| ||||||||||   |||||||| ||||||||||||||| ||||||||    
T  16011456 ttcgtttaaattcttctcagttggacccgtgcggtagcacgggtcaagagtctagt 16011511  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 37446832 - 37446804
Alignment:
Q  26 gttgcgacttattcgtttaacttcttctc 54  Q
    |||||||||||||||||||||||||||||    
T  37446832 gttgcgacttattcgtttaacttcttctc 37446804  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 54568440 - 54568374
Alignment:
Q  26 gttgcgacttattcgtttaacttcttctcagaatgacccgtggggtagcacgggtcaacagtctagt 92  Q
    |||| ||||||||||||||||||||||||   ||||||| |  | ||||||||||||| ||||||||    
T  54568440 gttgtgacttattcgtttaacttcttctcgatatgacccatacgatagcacgggtcaagagtctagt 54568374  T

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