View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_low_81 (Length: 214)
Name: NF10080_low_81
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_81 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 42199980 - 42200160
Alignment:
| Q |
17 |
tggagttgttctaaattctaattgcaggtattgggagtttgtaaattattgctatctagtgtttgtaggagtatgtatcttagtttctaatcaagatcaa |
116 |
Q |
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| T |
42199980 |
tggagttgttctaaattctaattgaaggtattgggagtttgtaaattattgctatctagtgtttgtaggagtatgtatcttagtttctaatcaagatcaa |
42200079 |
T |
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| Q |
117 |
ggttctagtgttgctgcattgctgtactataacaatttagtatttaacttatggcaatttgtgctgattgaacctatatat |
197 |
Q |
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| T |
42200080 |
ggttctagtgctgctgcattgctgtactataacaatttagtatttaacttatggcaatttgttctgattgaacctatatat |
42200160 |
T |
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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 49361523 - 49361438
Alignment:
| Q |
44 |
gtattgggagtttgtaaattattgctatctagtgtttgtaggagtatgtatcttagtttctaatcaagatcaaggttctagtgttg |
129 |
Q |
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| T |
49361523 |
gtatagggagtttgtaaattattgctatctagtgtttgttgtagtatgtatcttagtttctagtcaagatcaaggttctagtgttg |
49361438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 19029964 - 19029885
Alignment:
| Q |
44 |
gtattgggagtttgtaaattattgctatctagtgttt-gtaggagtatgtatcttagtttctaatcaagatcaaggttct |
122 |
Q |
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| T |
19029964 |
gtattgggagtttgtaaattattgttatctagtgttttgttggagtatgtatcttagtttctaatcaagatcaaggttct |
19029885 |
T |
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