View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_low_9 (Length: 540)
Name: NF10080_low_9
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 7 - 525
Target Start/End: Complemental strand, 45109650 - 45109132
Alignment:
| Q |
7 |
agcagagagaaccatagataaatgtccaagccagatatgatacttgatgcttgactcagatgtgagtccaacaagaggcagaatagaagacattcttgtg |
106 |
Q |
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| T |
45109650 |
agcaaagagaaccatagataattgtccaagccagatatgatacttgatgcttgactcagatgtgagtccaacaagaggcagaatagaagacattcttgtg |
45109551 |
T |
|
| Q |
107 |
actggaaagaacaaaaatgccaaacatatgtttcctatgtaagcaagtctcaaagatacactcctcaactttgcttcccatctattaccaagaccaataa |
206 |
Q |
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| T |
45109550 |
actggaaagaacaaaaatgccaaacatatgtttcctatgtaagcaagtctcaaagatacactcctcaactttgcttcccatctattaccaagaccaataa |
45109451 |
T |
|
| Q |
207 |
tcaatacaccaaattatacaataatctttatttcatgtagtttaacgtattgttgttaacaaaacaaatttaatctaatataatgtgctaagaaaagttt |
306 |
Q |
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| T |
45109450 |
tcaatacaccaaattatacaataatctttatttcatgtagtttaacgtattgttgttaacaaaacaaatttaatctaatataatgtgctaagaaaagttt |
45109351 |
T |
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| Q |
307 |
agattatttacattttctcatcttgtttgtgcatgcggaggtgatcgaaaccggtatgtaagtaattggaaagggaccatatcaagagtgcagcaaacat |
406 |
Q |
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| T |
45109350 |
agattatttacattttctcatcttgtttgtgcatgcggaggtgatcgaaaccggtatgtaagtaattggaaagggaccatatcaagagtgcagcaaacat |
45109251 |
T |
|
| Q |
407 |
gagtacaaaaataagctccatagctgaaacaattccaattggagacataaccaggaatggacgtctcaggaagcctaaacatctctttagagcgccgctg |
506 |
Q |
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| T |
45109250 |
gagtacaaaaataagctccatagctgaaacaattccaattggagacataaccaggaatggacgtctcaggaagcctaaacatctctttagagcgccgccg |
45109151 |
T |
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| Q |
507 |
ctggaaccaaaacatatat |
525 |
Q |
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| T |
45109150 |
ctggaaccaaaacttatat |
45109132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 45126839 - 45126663
Alignment:
| Q |
14 |
agaaccatagataaatgtccaagccagatatgatacttgatgcttgactcagatgtgagtccaacaagaggcagaatagaagacattcttgtgactggaa |
113 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| || |||| |
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| T |
45126839 |
agaaccatagataattgtccaagccagatatgatatttgatgcttgactcagatgtgagtccaacaagacgcagaatggaagaccctcttgtaaccggaa |
45126740 |
T |
|
| Q |
114 |
agaacaaaaatgccaaacatatgtttcctatgtaagcaagtctcaaagatacactcctcaactttgcttcccatcta |
190 |
Q |
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| T |
45126739 |
agaacaaaaatgcccaacatatgtttcctatgtaacctagtctcaaaaatacactcctgaacttcgcttcccatcta |
45126663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 310 - 525
Target Start/End: Complemental strand, 45126332 - 45126117
Alignment:
| Q |
310 |
ttatttacattttctcatcttgtttgtgcatgcggaggtgatcgaaaccggtatgtaagtaattggaaagggaccatatcaagagtgcagcaaacatgag |
409 |
Q |
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||||||||| ||| || ||| ||||||||| |||||||| | |||| | || |||||||||| |||||||||||||||| |||||| ||||||||| |
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| T |
45126332 |
ttatttacactttttcgccttctttgtgcatatggaggtgagcaaaactgatacttaagtaattgtaaagggaccatatcaaaagtgcaacaaacatgat |
45126233 |
T |
|
| Q |
410 |
tacaaaaataagctccatagctgaaacaattccaattggagacataaccaggaatggacgtctcaggaagcctaaacatctctttagagcgccgctgctg |
509 |
Q |
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| T |
45126232 |
tgcaaaaataagctccatagctgaaacaattccaattgtaggcatcaccaggaatggacgtctcaggaaacataaacatttttttagagcgccagtactg |
45126133 |
T |
|
| Q |
510 |
gaaccaaaacatatat |
525 |
Q |
| |
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||| ||||||||||| |
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| T |
45126132 |
aaacaaaaacatatat |
45126117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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