View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10081_high_9 (Length: 208)

Name: NF10081_high_9
Description: NF10081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10081_high_9
NF10081_high_9
[»] chr7 (2 HSPs)
chr7 (12-191)||(25960343-25960522)
chr7 (134-190)||(25975221-25975277)
[»] chr1 (9 HSPs)
chr1 (37-191)||(17947415-17947569)
chr1 (37-191)||(17949945-17950099)
chr1 (37-191)||(17856492-17856646)
chr1 (48-192)||(17946377-17946521)
chr1 (48-191)||(17852849-17852992)
chr1 (37-191)||(17945073-17945227)
chr1 (33-173)||(17855019-17855159)
chr1 (33-191)||(17857552-17857709)
chr1 (48-191)||(17948904-17949047)
[»] scaffold0098 (4 HSPs)
scaffold0098 (47-189)||(10692-10834)
scaffold0098 (33-191)||(5860-6018)
scaffold0098 (144-188)||(7434-7478)
scaffold0098 (123-191)||(8382-8450)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 25960522 - 25960343
Alignment:
Q  12 cacagaatactaatcaggcagctgtatcccgatcacttccatggcatgatccttcttggaaagataaagcatttaagagaccagaatcagagtcacaaga 111  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  25960522 cacagaatactaatcaggcagctgtatcccgatctcttccatggcatgatccttcttggaaagataaagcatttaagagaccagaatcagagtcacaatt 25960423  T
Q  112 gcaccgttctacccactcgagcatgaaatcattttccaacgaaagtgatctgttagatgaatgctttcagccattggata 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25960422 gcaccgttctacccactcgagcatgaaatcattttccaacgaaagtgatctgttagatgaatgctttcagccattggata 25960343  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 25975277 - 25975221
Alignment:
Q  134 atgaaatcattttccaacgaaagtgatctgttagatgaatgctttcagccattggat 190  Q
    |||||||||  ||||||| | |||||| |||| ||||| ||||||||||||||||||    
T  25975277 atgaaatcaggttccaacaagagtgatttgtttgatgagtgctttcagccattggat 25975221  T

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Target: chr1 (Bit Score: 55; Significance: 8e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 37 - 191
Target Start/End: Complemental strand, 17947569 - 17947415
Alignment:
Q  37 atcccgatcacttccatggcatgatccttcttggaaagataaagcatttaagagaccagaatcagagtcacaagagcaccgttctacccactcgagcatg 136  Q
    ||||||||| |||  |||||||||||||||||| ||||||||| |||| ||||| |  |||||  ||  | | ||||| |||||| ||||||| || ||     
T  17947569 atcccgatctcttatatggcatgatccttcttgaaaagataaaacattcaagaggcgtgaatcttagatagaggagcatcgttcttcccactcaagtata 17947470  T
Q  137 aaatcattttccaacgaaagtgatctgttagatgaatgctttcagccattggata 191  Q
    |||||| |||||||| ||| |||| ||||||||||||| ||||||||||||||||    
T  17947469 aaatcagtttccaacaaaattgatttgttagatgaatgatttcagccattggata 17947415  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 37 - 191
Target Start/End: Complemental strand, 17950099 - 17949945
Alignment:
Q  37 atcccgatcacttccatggcatgatccttcttggaaagataaagcatttaagagaccagaatcagagtcacaagagcaccgttctacccactcgagcatg 136  Q
    ||||||||| |||  ||||||||| |||||||| ||||||||| |||||||||| |  |||||  |   | | |||||||||||| ||||||| || ||     
T  17950099 atcccgatctcttatatggcatgacccttcttgaaaagataaaacatttaagagccttgaatcttatatagaggagcaccgttcttcccactcaagtata 17950000  T
Q  137 aaatcattttccaacgaaagtgatctgttagatgaatgctttcagccattggata 191  Q
    |||||| |||||||| ||| |||| ||||||||||||| ||||||||||||||||    
T  17949999 aaatcagtttccaacaaaattgatttgttagatgaatgatttcagccattggata 17949945  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 17856492 - 17856646
Alignment:
Q  37 atcccgatcacttccatggcatgatccttcttggaaagataaagcatttaaga-gaccagaatcagagtcacaagagcaccgttctacccactcgagcat 135  Q
    ||||| ||| |||| |||||||||||||||||| ||||||||| ||||||||| || | |||||| ||  | | |||||  ||||| ||||||| || ||    
T  17856492 atcccaatctcttctatggcatgatccttcttgaaaagataaaacatttaagatgaac-gaatcatagatagaggagcatagttcttcccactcaagtat 17856590  T
Q  136 gaaatcattttccaacgaaagtgatctgttagatgaatgctttcagccattggata 191  Q
     ||||||||||||||   ||||||| ||||||||||||| ||||||||||||||||    
T  17856591 aaaatcattttccaatagaagtgatttgttagatgaatgatttcagccattggata 17856646  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 192
Target Start/End: Original strand, 17946377 - 17946521
Alignment:
Q  48 ttccatggcatgatccttcttggaaagataaagcatttaagagaccagaatcagagtcacaagagcaccgttctacccactcgagcatgaaatcattttc 147  Q
    ||||||| |||||||||||||| |||||| || || ||||||| |   |||||||| || | ||||| |||||| |||| || || ||||||||| ||||    
T  17946377 ttccatgacatgatccttcttgaaaagatgaaacacttaagaggcattaatcagagacagaggagcatcgttcttcccattcaagtatgaaatcagtttc 17946476  T
Q  148 caacgaaagtgatctgttagatgaatgctttcagccattggatat 192  Q
    |||  | | |||| ||||||||||||| |||||||||||||||||    
T  17946477 caaatagaatgatttgttagatgaatgatttcagccattggatat 17946521  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 191
Target Start/End: Complemental strand, 17852992 - 17852849
Alignment:
Q  48 ttccatggcatgatccttcttggaaagataaagcatttaagagaccagaatcagagtcacaagagcaccgttctacccactcgagcatgaaatcattttc 147  Q
    ||||||| |||||||||||||| |||| |||| || ||||||| |  |||| ||||  | | ||||| |||||| ||||||| || ||||||||| ||||    
T  17852992 ttccatgacatgatccttcttgaaaagttaaaacacttaagaggcatgaattagagatagaggagcatcgttcttcccactcaagtatgaaatcagtttc 17852893  T
Q  148 caacgaaagtgatctgttagatgaatgctttcagccattggata 191  Q
    |||| | | |||| ||||||||||| | ||||||||||||||||    
T  17852892 caacaagaatgatttgttagatgaacgatttcagccattggata 17852849  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 191
Target Start/End: Complemental strand, 17945227 - 17945073
Alignment:
Q  37 atcccgatcacttccatggcatgatccttcttggaaagataaagcatttaagagaccagaatcagagtcacaagagcaccgttctacccactcgagcatg 136  Q
    ||||||||| |||| ||||||  ||||||||   ||||||||| |||||||||| |  |||||  ||  | | ||| | |||||| ||||||| || ||     
T  17945227 atcccgatctcttctatggcactatccttctctaaaagataaaacatttaagaggcatgaatcttagatagaggagtatcgttcttcccactcaagtata 17945128  T
Q  137 aaatcattttccaacgaaagtgatctgttagatgaatgctttcagccattggata 191  Q
    |||||| |||||||| ||| |||| ||||||||||||| ||||||||||||||||    
T  17945127 aaatcagtttccaacaaaattgatttgttagatgaatgatttcagccattggata 17945073  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 17855159 - 17855019
Alignment:
Q  33 ctgtatcccgatcacttccatggcatgatccttcttggaaagataaagcatttaagagaccagaatcagagtcacaagagcaccgttctacccactcgag 132  Q
    ||||||||| |||  ||||||| |||||||||||||| |||| |||| || ||||||| |  |||||||||  | | ||||| |||||| ||||||| ||    
T  17855159 ctgtatccctatcttttccatgacatgatccttcttgaaaagttaaaacacttaagaggcatgaatcagagatagaggagcatcgttcttcccactcaag 17855060  T
Q  133 catgaaatcattttccaacgaaagtgatctgttagatgaat 173  Q
     ||||||||| |||||||| | | |||| |||||| |||||    
T  17855059 tatgaaatcaatttccaacaagaatgatttgttaggtgaat 17855019  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 17857709 - 17857552
Alignment:
Q  33 ctgtatcccgatcacttccatggcatgatccttcttggaaagataaagcatttaagagaccagaatcagagtcacaagagcaccgttctacccactcgag 132  Q
    ||||||||| |||  ||||||| |||||||||||||| |||| |||| || ||||||| |  |||| | | | | | ||||| |||||| ||||||| ||    
T  17857709 ctgtatccctatcttttccatgacatgatccttcttgaaaagttaaaacacttaagaggcatgaatgaaaat-agaggagcatcgttcttcccactcaag 17857611  T
Q  133 catgaaatcattttccaacgaaagtgatctgttagatgaatgctttcagccattggata 191  Q
     |||||| || |||||||| | | |||| ||||||||||||| |||||||||| |||||    
T  17857610 tatgaaaacagtttccaacaagaatgatttgttagatgaatgatttcagccatgggata 17857552  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 191
Target Start/End: Original strand, 17948904 - 17949047
Alignment:
Q  48 ttccatggcatgatccttcttggaaagataaagcatttaagagaccagaatcagagtcacaagagcaccgttctacccactcgagcatgaaatcattttc 147  Q
    ||||||| || ||||||||||| ||||||||| || ||||||| |  ||||||| |  | | ||||| | |||| | || || || ||||||||| ||||    
T  17948904 ttccatgacacgatccttcttgaaaagataaaacacttaagaggcttgaatcagggatagaggagcatcattcttctcattcaagtatgaaatcagtttc 17949003  T
Q  148 caacgaaagtgatctgttagatgaatgctttcagccattggata 191  Q
    |||| | | |||| ||||||||||||| ||| ||||||||||||    
T  17949004 caacaagaatgatatgttagatgaatgatttaagccattggata 17949047  T

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Target: scaffold0098 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 189
Target Start/End: Original strand, 10692 - 10834
Alignment:
Q  47 cttccatggcatgatccttcttggaaagataaagcatttaagagaccagaatcagagtcacaagagcaccgttctacccactcgagcatgaaatcatttt 146  Q
    |||| |||||||||||||||||| ||||||||| ||||||||||||  |||||  ||  | | |||||  ||||| ||||||| |  || |||| | |||    
T  10692 cttctatggcatgatccttcttgaaaagataaaacatttaagagacatgaatcttagatagaggagcattgttcttcccactcaaatataaaataagttt 10791  T
Q  147 ccaacgaaagtgatctgttagatgaatgctttcagccattgga 189  Q
    ||||| |||||||| ||||||||||| | ||||||||||||||    
T  10792 ccaacaaaagtgatttgttagatgaacgatttcagccattgga 10834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 6018 - 5860
Alignment:
Q  33 ctgtatcccgatcacttccatggcatgatccttcttggaaagataaagcatttaa-gagaccagaatcagagtcacaagagcaccgttctacccactcga 131  Q
    ||||||||| |||  ||||||| |||||||||||||  ||||||||| || |||| ||| |  |||| ||||  | | ||||| |||| | ||||||| |    
T  6018 ctgtatccctatcttttccatgacatgatccttcttc-aaagataaaacacttaatgaggcatgaattagaggtagaggagcatcgtttttcccactcaa 5920  T
Q  132 gcatgaaatcattttccaacgaaagtgatctgttagatgaatgctttcagccattggata 191  Q
    | ||||||||| |||||||| | | | || ||||||||||||| ||||||| ||||||||    
T  5919 gtatgaaatcaatttccaacaagaattatttgttagatgaatgatttcagctattggata 5860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 7434 - 7478
Alignment:
Q  144 tttccaacgaaagtgatctgttagatgaatgctttcagccattgg 188  Q
    |||||||| |||||||| ||||||||||||| ||||| |||||||    
T  7434 tttccaacaaaagtgatttgttagatgaatgatttcatccattgg 7478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 8450 - 8382
Alignment:
Q  123 cccactcgagcatgaaatcattttccaacgaaagtgatctgttagatgaatgctttcagccattggata 191  Q
    ||||||| || ||||||||| |||||||| | | | || ||||||||||||| ||||||| ||||||||    
T  8450 cccactcaagtatgaaatcagtttccaacaagaattatttgttagatgaatgatttcagctattggata 8382  T

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