View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10081_low_2 (Length: 477)
Name: NF10081_low_2
Description: NF10081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10081_low_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 326
Target Start/End: Original strand, 29516056 - 29516364
Alignment:
| Q |
21 |
acctactcactggccatcacatataaggcccaataaggaactagnnnnnnnn-caaggagcattatccaacactaaaataaaagtaatctaatgttttta |
119 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29516056 |
acctactcataggccatcacatataaggcccaataaggaactagaaaaaaaaacaaggagcattatccaacactaaaataaaagtaatctaatgttttta |
29516155 |
T |
|
| Q |
120 |
aactaaacactatgacaatc--tattcactaaagagagtgtaagatagtatggattattattgggaacaatcttggtgtccaaaaataatgagatttgat |
217 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29516156 |
aactaaacactattacaattaatattcactaaagagagtgtaagatagtatggattattattgggaacaatcttggtgtccaaaaataatgagatttgat |
29516255 |
T |
|
| Q |
218 |
cttcaagattttcccttaatttcttcaccctagcccttgtcatagggccaccaactcctttgatattaacttgtcgactcttgtaactcgttccttgatc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
29516256 |
cttcaagattttcccttaatttcttcaccctagcccttgtcattgggccaccaactcctttgatatcaacttgtcgactcttgtaactcgttccttgatc |
29516355 |
T |
|
| Q |
318 |
ctcattaat |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
29516356 |
ctcattaat |
29516364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 141 - 324
Target Start/End: Complemental strand, 4167927 - 4167744
Alignment:
| Q |
141 |
attcactaaagagagtgtaagatagtatggattattattgggaacaatcttggtgtccaaaaataatgagatttgatcttcaagattttcccttaatttc |
240 |
Q |
| |
|
||||||||||||||| |||| ||||||||| | |||||| ||| || ||||||| ||||||||| | |||||| |||||||||||| |||||||||| |
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|
| T |
4167927 |
attcactaaagagagggtaaagtagtatggagtgttattgagaatgattttggtgtgcaaaaataaagtgatttgttcttcaagatttccccttaatttt |
4167828 |
T |
|
| Q |
241 |
ttcaccctagcccttgtcatagggccaccaactcctttgatattaacttgtcgactcttgtaactcgttccttgatcctcatta |
324 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| |||| |||| | || | ||||||| ||||||||||||||||||| |
|
|
| T |
4167827 |
ttcaccctagcccttgtcatgggaccaccaactccttttatatccacttattgattgttgtaacccgttccttgatcctcatta |
4167744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 21 - 324
Target Start/End: Complemental strand, 36183586 - 36183282
Alignment:
| Q |
21 |
acctactcactggccatcacatataaggcccaataaggaactagnnnnnnnncaaggagcattatccaacactaaaataaaagtaatctaatgtttttaa |
120 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36183586 |
acctactcattggccatcacatataaggcccaataaggaactagaaaaaaa-caaggagcattatccaacactaaaataaaagtaatctaatgtttttaa |
36183488 |
T |
|
| Q |
121 |
actaaacactatgacaatc--tattcactaaagagagtgtaagatagtatggattattattgggaacaatcttggtgtccaaaaataatgagatttgatc |
218 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36183487 |
actaaacactattacaattaatattcactaaagagagtgtaagataatatggattattattgggaacaatcttggtgtccaaaaataatgagatttgatc |
36183388 |
T |
|
| Q |
219 |
ttcaagattttcccttaatttcttcaccctagcccttgtcatagggccaccaactcctttgatattaacttgtcgactcttgtaactcgttccttgatcc |
318 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36183387 |
ttcaagatttccccttaatttcttcaccctagcccttgtcatggggccaccaactcctttgatatcaacttgtcgactcttgtaactcgttccttgatcc |
36183288 |
T |
|
| Q |
319 |
tcatta |
324 |
Q |
| |
|
|||||| |
|
|
| T |
36183287 |
tcatta |
36183282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 73 - 325
Target Start/End: Original strand, 28378922 - 28379174
Alignment:
| Q |
73 |
caaggagcattatccaacactaaaataaaagtaatctaatgtttttaaactaaacactatgacaatc--tattcactaaagagagtgtaagatagtatgg |
170 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
28378922 |
caaggagcattatccaactccaaaataaaagtaatctaatgtttttaaactaaacactt--acaattaatattcactaaagagagtgtaagatggtatgg |
28379019 |
T |
|
| Q |
171 |
attattattgggaacaatcttggtgtccaaaaataatgagatttgatcttcaagattttcccttaatttcttcaccctagcccttgtcatagggccacca |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28379020 |
attattattgggaacaatcttggtgtccaaaaataatgagatttgatcttcaagattttcctttaatttcttcaccctagcccttgtcatggggccacca |
28379119 |
T |
|
| Q |
271 |
actcctttgatattaacttgtcgactcttgtaactcgttccttgatcctcattaa |
325 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28379120 |
actcctttgatatcaacttgtcgactcttgtaactcgttccttgatcctcattaa |
28379174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 24 - 324
Target Start/End: Original strand, 15010854 - 15011153
Alignment:
| Q |
24 |
tactcactggccatcacatataaggcccaataaggaactagnnnnnnnncaaggagcattatccaacactaaaataaaagtaatctaatgtttttaaact |
123 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
15010854 |
tactcattggccatcacatataaggcccaataaggaactagaaaaa---caaggagcattatccaactccaaaataaaagtaatctaatgtttttaaact |
15010950 |
T |
|
| Q |
124 |
aaacactatgacaatc--tattcactaaagagagtgtaagatagtatggattattattgggaacaatcttggtgtccaaaaataatgagatttgatcttc |
221 |
Q |
| |
|
||| ||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15010951 |
aaatactattacaattaatattcactaaagagagtgtaaaatagtatggattattattgggaacaatcttggtgtccaaaaataatgagatttgatcttc |
15011050 |
T |
|
| Q |
222 |
aagattttcccttaatttcttcaccctagcccttgtcatagggccaccaactcctttgatattaacttgtcgactcttgtaactcgttccttgatcctca |
321 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
15011051 |
aagattttcccttaatttcttcaccctaacccttgtcatggggccaccaactcctttgatatcaacttgtcgactcttgtaacttgttccttcatcctca |
15011150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 21 - 324
Target Start/End: Complemental strand, 21797934 - 21797632
Alignment:
| Q |
21 |
acctactcactggccatcacatataaggcccaataaggaactagnnnnnnnncaaggagcattatccaacactaaaataaaagtaatctaatgtttttaa |
120 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| |||| | ||| |||||||||||||| |||| || |
|
|
| T |
21797934 |
acctactcattggccatcacctataaggcccaataaggaactagaaaaa---caaggagcattatacaactccaaattaaaagtaatctaaa-ttttaaa |
21797839 |
T |
|
| Q |
121 |
actaaacact--atgacaatcta--ttcactaaagagagtgtaagatagtatggattattattgggaacaatcttggtgtccaaaaataatgagatttga |
216 |
Q |
| |
|
||||||| | || |||| | | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21797838 |
actaaactatttattacaaacaagattcactaaagaaagtgtaagatagtatggattattattgggaacaatcttggtgtccaaaa-taatgagatttga |
21797740 |
T |
|
| Q |
217 |
tcttcaagattttcccttaatttcttcaccctagcccttgtcatagggccaccaactcctttgatattaacttgtcgactcttgtaactcgttccttgat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
21797739 |
tcttcaagattttcccttaatttcttcaccctagcccttgtcatggggccaccaactcctttgatatcaacttgttgactcttgtaactcgttccttgat |
21797640 |
T |
|
| Q |
317 |
cctcatta |
324 |
Q |
| |
|
|||||||| |
|
|
| T |
21797639 |
cctcatta |
21797632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 21 - 324
Target Start/End: Complemental strand, 21803088 - 21802786
Alignment:
| Q |
21 |
acctactcactggccatcacatataaggcccaataaggaactagnnnnnnnncaaggagcattatccaacactaaaataaaagtaatctaatgtttttaa |
120 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| |||| | ||| |||||||||||||| |||| || |
|
|
| T |
21803088 |
acctactcattggccatcacctataaggcccaataaggaactagaaaaa---caaggagcattatacaactccaaattaaaagtaatctaaa-ttttaaa |
21802993 |
T |
|
| Q |
121 |
actaaacact--atgacaatcta--ttcactaaagagagtgtaagatagtatggattattattgggaacaatcttggtgtccaaaaataatgagatttga |
216 |
Q |
| |
|
||||||| | || |||| | | ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21802992 |
actaaactatttattacaaacaagattcactaaagaaagtgtaagatagtatggattattat-gggaacaatcttggtgtccaaaaataatgagatttga |
21802894 |
T |
|
| Q |
217 |
tcttcaagattttcccttaatttcttcaccctagcccttgtcatagggccaccaactcctttgatattaacttgtcgactcttgtaactcgttccttgat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
21802893 |
tcttcaagattttcccttaatttcttcaccctagcccttgtcatggggccaccaactcctttgatatcaacttgttgactcttgtaactcgttccttgat |
21802794 |
T |
|
| Q |
317 |
cctcatta |
324 |
Q |
| |
|
||| |||| |
|
|
| T |
21802793 |
ccttatta |
21802786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 44801746 - 44801833
Alignment:
| Q |
21 |
acctactcactggccatcacatataaggcccaataaggaactagnnnnnnnncaaggagcattatccaacactaaaataaaagtaatctaa |
111 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| |||| | ||| |||||||||||||| |
|
|
| T |
44801746 |
acctactcattggccatcacctataaggcccaataaggaactag---aaaaacaaggagcattatacaactccaaattaaaagtaatctaa |
44801833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 27737561 - 27737518
Alignment:
| Q |
21 |
acctactcactggccatcacatataaggcccaataaggaactag |
64 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
27737561 |
acctactcattggccatcacctataaggcccaataaggaactag |
27737518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 27635575 - 27635662
Alignment:
| Q |
21 |
acctactcactggccatcacatataaggcccaataaggaactagnnnnnnnncaaggagcattatccaacactaaaataaaagtaatctaa |
111 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| |||||| ||||||||||||| |||| | ||| |||||||||||||| |
|
|
| T |
27635575 |
acctactcattggccatcacctataaggcccaataagaaactag---aaaaacaaggagcattatacaactccaaattaaaagtaatctaa |
27635662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 28394127 - 28394284
Alignment:
| Q |
21 |
acctactcactggccatcacatataaggcccaataaggaactagnnnnnnnncaaggagcattatccaacactaaaataaaagtaatctaatgtttttaa |
120 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28394127 |
acctactcattggccatcgcatataaggcccaataaggaactagaaaaaaaacaaggagcattatccaacactaaaataaaagtaatctaatgtttttaa |
28394226 |
T |
|
| Q |
121 |
actaaacactatgacaat--ctattcactaaagagagtgtaagatagtatggattatt |
176 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28394227 |
actaaacattattacaattaatattcactaaagagagtgtaagatagtatggattatt |
28394284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 53127703 - 53127660
Alignment:
| Q |
21 |
acctactcactggccatcacatataaggcccaataaggaactag |
64 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
53127703 |
acctactcattggccatcacctataaggcccaataaagaactag |
53127660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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