View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10081_low_3 (Length: 466)
Name: NF10081_low_3
Description: NF10081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10081_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 47637256 - 47636816
Alignment:
| Q |
1 |
cgtaagaagcataacaaagtgcggtaacaacatgaattatagcaatcctactggaagattcgagaatttaccgcgaagttacagcgcggtaacttctcga |
100 |
Q |
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| T |
47637256 |
cgtaagaagcataacaaagtgcggtaacaacatgaattatagcaatcctactggaagattcgagaatttaccgcgaagttacagcgcggtaacttctcga |
47637157 |
T |
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| Q |
101 |
tcaggtggtggcggtgataacgaagattttgctgagttaatgagagcagcttcagctaggactttgggtaaccgaattgatatggatttggttctnnnnn |
200 |
Q |
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| T |
47637156 |
tcaggtggtggtggtgataacgaagattttgctgagttaatgagagcagcttcagctaggactttgggtaaccgaattgatatggatttggttctcaaac |
47637057 |
T |
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| Q |
201 |
nnnnnnnnnnnnnnntagaaccaaaacccgtttcttcaaacgggttacccaaatccgttagtgttggtatgggtcggattgatgaggaaaagcctagtga |
300 |
Q |
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| T |
47637056 |
aacaac---------tagaaccaaaacccgtttcttcaaacgggttacccaaatccgttagtgttggtatgggtcggattgatgaggaaaagcctagtga |
47636966 |
T |
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| Q |
301 |
tgatgatattgctgaaggtgatgttcctgtggtggcaaattcttatccaagaagtagaagctatgctgttggaaagagaaatgttgttttgtagaatcat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47636965 |
tgatgatattgctgaaggtgatgttcctgtggtggcaaattcttatccaagaagtagaagctatgctgttggaaagagaagtgttgttttgtagaatcat |
47636866 |
T |
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| Q |
401 |
taaaattaatctctcttgagaattgatgatgatttcatttttcatgttct |
450 |
Q |
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| T |
47636865 |
taaaattaatctctcttgagaattgatgatgatttcatttttcatgttct |
47636816 |
T |
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