View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10081_low_4 (Length: 422)
Name: NF10081_low_4
Description: NF10081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10081_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 20 - 418
Target Start/End: Complemental strand, 6426188 - 6425793
Alignment:
| Q |
20 |
acctcaacacacttctgcttaaagaaaattgcagaatcaatatcacatttcaaaaacccaattgaagttgtaagtcaagagatatcaatctcttattgtt |
119 |
Q |
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| T |
6426188 |
acctcaacacacttctgcttaaagaaaattgcagaatcaatatcacatttcaaaaacccaattgaagttgtaagtcaagaaatatcaatctcttattgtt |
6426089 |
T |
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| Q |
120 |
gaataaaacttgattgttcgttggacctgctcgcgcgaactttcatccatgatgtgaatttatagcttgatgccaaactcgatgagagtatcgatcaaca |
219 |
Q |
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| T |
6426088 |
gaataaaacttgattgttcgttggacctgctcatgcgaactttcattcatgatgtgaatttatagcttgatgccaaactcgatgagagtatcgatcaaca |
6425989 |
T |
|
| Q |
220 |
taaactcgatgacactcttaaaccaatactctttattactactaaacctctaaatcctttcattagcttgagaaagtatgaaagatggattttgatgaga |
319 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6425988 |
taaactcgatgacactcttaaacctatactctttattactactaaacctctaaatcctttcattagcttgagaaagtatgaaagatggattttgatgaga |
6425889 |
T |
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| Q |
320 |
aattccacaacatcgttgtccnnnnnnncttcacgaatgatatgctcctttggtgatctatcaatacagtagcacaccttgaatttgttcatctcactc |
418 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||| |
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| T |
6425888 |
aattccacaacatcgttgtccaaaaaaacttcacgaatgatatgctcctttgg---tctatcaatacagtagcacaccaagaatttgttcatctaactc |
6425793 |
T |
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