View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10081_low_6 (Length: 402)
Name: NF10081_low_6
Description: NF10081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10081_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 5054105 - 5054488
Alignment:
| Q |
17 |
atgtatgcttagaacgaataatatggaaattggaatgaaataaggagaaactaagtaacaggataggatattatttttgtctctggaggcaaaagatgtt |
116 |
Q |
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| T |
5054105 |
atgtatgcttagaaagaataatatggaaattggaatgaaataaggagaaactaagtaacaggataggatattatttttgtctctggaggcaaaatatgtt |
5054204 |
T |
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| Q |
117 |
ctaaaagtaaacagaattgcttttacctacgaacgatgaatttaagaaaaagaatggcaaaattaaaaacaaacagtagaaggattttataactctacac |
216 |
Q |
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| T |
5054205 |
ctaaaagtaaacagaattgcttttacctacgaacgatgaatttaagaaaaagaatggcaaaattaaaaacaaacagtagatgaattttataactct--ac |
5054302 |
T |
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| Q |
217 |
ctatgttgtgaattaccaatatcttatatgaaatgtgagagttggtggcagctagttgttttggagaaagcatatgaatcacacgcgggtgagagtttgt |
316 |
Q |
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| T |
5054303 |
ctatgttgtgaattaccaatatcttatatgaaatgtgagagttggtggcaggtagttgttttggagaaagcatatgaatcacacgcgggtgagagtttgt |
5054402 |
T |
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| Q |
317 |
ccagcatgacaatatttgtttgaaactttctatttgttttcttcatgttaggacactatcatgtcttataatatcatcacatgcac |
402 |
Q |
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| T |
5054403 |
ccagcatgacaatatttgtttgaaactttctatttgttttcttcatgttaggacattatcatgtcttataatatcatcacatgcac |
5054488 |
T |
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