View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10082_high_1 (Length: 646)
Name: NF10082_high_1
Description: NF10082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10082_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 9e-81; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 93 - 279
Target Start/End: Complemental strand, 54951344 - 54951156
Alignment:
| Q |
93 |
atgagatgaataagaaacggacgaagggcatataaaagtgaga-aaaatatcataatacaaaatcccaacagtt-aatcgatgattcttgtggttagata |
190 |
Q |
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| T |
54951344 |
atgagatgaataagaaacggacgaagggcatataaaagtgagataaaatatcataatacaaaatcccaacagttgaatcgatgattcttgtggttagata |
54951245 |
T |
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| Q |
191 |
gattaataatttattgaactaacttatataagcttatttgatcaaatgaaaagtgtttggtaaacaaacttttcttgttggcttataac |
279 |
Q |
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| T |
54951244 |
gattaataatttattgaactaacttatataagcttgtttgatcaaatgaaaagtgtttgctaaataaacttttcttattagcttataac |
54951156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 512 - 629
Target Start/End: Complemental strand, 54950424 - 54950307
Alignment:
| Q |
512 |
tacaattgtgtttagtgctgctacgtgaattttcccatatatacgattctgcattgttgcgtttaaatgttcatgatttacttcataattcgcgttatag |
611 |
Q |
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| T |
54950424 |
tacaattgtgttttgtgctgctacgtgaattttcccatatatacgattctgcattgttgcgtttaaatgttcatgatttactgcataattcgcgttatag |
54950325 |
T |
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| Q |
612 |
gttggtttataagtgtat |
629 |
Q |
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| T |
54950324 |
gttggtttataagtgtat |
54950307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 346 - 445
Target Start/End: Complemental strand, 54950590 - 54950491
Alignment:
| Q |
346 |
attctttgattgatagtgatacatccattcttttctaaagatgcatatcgtcagttttgggcagaattccatgatcaattcttctcttctctcaatcttg |
445 |
Q |
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| T |
54950590 |
attctttgattgatagtgatacatccattcttttctaaagatgcatgtcgtcagttttgggcagaattccatgatcaattcttctcttctctcaatcttg |
54950491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 54944869 - 54944793
Alignment:
| Q |
346 |
attctttgattgatagtgatacatccattcttttctaaagatgcatatcgtcagttttgggcagaattccatgatca |
422 |
Q |
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| T |
54944869 |
attctttgattgatagtgatgaagccactcttttgtaaagatgcatgtcatcgtttttgggcagaattccataatca |
54944793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 46334697 - 46334737
Alignment:
| Q |
217 |
tataagcttatttgatcaaatgaaaagtgtttggtaaacaa |
257 |
Q |
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| T |
46334697 |
tataagcttgtttgatcaaatgagacgtgtttggtaaacaa |
46334737 |
T |
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