View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10082_high_2 (Length: 421)
Name: NF10082_high_2
Description: NF10082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10082_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Original strand, 10173736 - 10174130
Alignment:
| Q |
19 |
ccattagtagaagcccaatgtaatccgcttcaaattcacacctgtaaattgtgagcgaaaaggaccgttggtttagagtagatgaaacactattctactt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10173736 |
ccattagtagaagcccaatgtaatccgcttcaaattcacacttgtaaattgtgagcgaaaaggaccgttggtttagagtagatgaaacacaattctactt |
10173835 |
T |
|
| Q |
119 |
ccatactccagataaggcatgcaactcaaaataaaccaaagaagccatgtcaaatcatgagattaaaaggaagaacaagtagtataaattaacaaacgta |
218 |
Q |
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|| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10173836 |
ccgtactccaggtaaggcatgcaactcaaaataaactaaagaagccatgtcaaatcatgagattaaagggaagaacaagtagtataaattaacaaacgta |
10173935 |
T |
|
| Q |
219 |
agaacagatgacattgatgaacaattaaagaactaaacggtaaatcaatgtattagaaaaagagagataatgaattaatcttaccgatgactaatccaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10173936 |
agaacagatgacattgatgaacaattaaagaactaaacagtaaatcaatgtattagaaaaagagagataatgacttaatcttaccgatgactaatccaat |
10174035 |
T |
|
| Q |
319 |
tcgtcactgtttcgtaaaaatcaatgaggacaaatagattaagcacacagtgtatcatagaaatgaactcgacctttgtacacatttcaactcca |
413 |
Q |
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| T |
10174036 |
tccttactgtttcgtaaaaatcaatgaggacaaatagattaagcacacagtctatcatagaaatcaactcgacctttgtacacatttcaactcca |
10174130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 2928025 - 2928078
Alignment:
| Q |
19 |
ccattagtagaagcccaatgtaatccgcttcaaattcacacctgtaaattgtga |
72 |
Q |
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|||||||||||||||| || ||||| |||||||||||| ||||| ||||||||| |
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| T |
2928025 |
ccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtga |
2928078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 2311245 - 2311192
Alignment:
| Q |
19 |
ccattagtagaagcccaatgtaatccgcttcaaattcacacctgtaaattgtga |
72 |
Q |
| |
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|||||||| ||||||| |||||||| |||||||||||| || || ||||||||| |
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| T |
2311245 |
ccattagttgaagcccgatgtaatcagcttcaaattcaaacatgcaaattgtga |
2311192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 7e-99; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 76 - 399
Target Start/End: Original strand, 1238028 - 1238353
Alignment:
| Q |
76 |
aaaaggaccgttggtttagagtagatgaaacac--tattctacttccatactccagataaggcatgcaactcaaaataaaccaaagaagccatgtcaaat |
173 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1238028 |
aaaaggaccgttggtttagagaagatgaaacacattattctacttccatactccttgtaagg--tgcaactcaaaataaaccaaagaagccatgtcaaat |
1238125 |
T |
|
| Q |
174 |
catgagattaaaaggaagaacaagtagtataaattaacaaacgta----agaacagatgacattgatgaacaattaaagaactaaacggtaaatcaatgt |
269 |
Q |
| |
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||||| ||||||||||||||||||||| |||| |||||||||| |||||| |||||||| || |||||||||||||| ||||||||||||||| |
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| T |
1238126 |
catgatgctaaaaggaagaacaagtagtacaaat-aacaaacgtacgtaagaacacatgacattaataaacaattaaagaacaaaacggtaaatcaattg |
1238224 |
T |
|
| Q |
270 |
attagaaaaagagagataatgaattaatcttaccgatgactaatccaattcgtcactgtttcgtaaaaatcaatgaggacaaatagattaagcacacagt |
369 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| ||||||| |||||||||||| || |
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| T |
1238225 |
attagaaaa-gagagataatgaattaatcttaccgatgatcaatccaattcctcactgtttggtaaaaatcaatggtgacaaatcgattaagcacacggt |
1238323 |
T |
|
| Q |
370 |
gtatcatagaaatgaactcgacctttgtac |
399 |
Q |
| |
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||||||||||||| |||||||||||||||| |
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|
| T |
1238324 |
gtatcatagaaatcaactcgacctttgtac |
1238353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 382
Target Start/End: Complemental strand, 1174516 - 1174378
Alignment:
| Q |
243 |
ttaaagaactaaacggtaaatcaatgtattagaaaaagagagataatgaattaatcttaccgatgactaatccaattcgtcactgtttcgtaaaaatcaa |
342 |
Q |
| |
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||||||||| ||||| ||||||||| || | |||||||||||||||||||||||||||||| || | ||||||||| || |||||| ||||||||||| |
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|
| T |
1174516 |
ttaaagaacaaaacgataaatcaatcgatca-aaaaagagagataatgaattaatcttaccgtcgattcatccaattcatcgctgtttggtaaaaatcaa |
1174418 |
T |
|
| Q |
343 |
tgaggacaaatagattaagcacacagtgtatcatagaaat |
382 |
Q |
| |
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|| ||||||| |||||||||| || ||||||| |||| |
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| T |
1174417 |
tggtgacaaatcaattaagcacatggtctatcatacaaat |
1174378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 794575 - 794648
Alignment:
| Q |
144 |
tcaaaataaaccaaagaagccatgtcaaatcatgagattaaaaggaagaacaagtagtataaattaacaaacgt |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||| || ||||||||||| ||| |||||||||| |
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|
| T |
794575 |
tcaaaataaaccaaagaagtcatgtcaaatcatgaggctaaaagaaataacaagtagtacaaagtaacaaacgt |
794648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 1237951 - 1238004
Alignment:
| Q |
19 |
ccattagtagaagcccaatgtaatccgcttcaaattcacacctgtaaattgtga |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
1237951 |
ccattagtagaagcccaatgtaatccgcttcaaattcaaacctgcaaattgtga |
1238004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 1175490 - 1175437
Alignment:
| Q |
19 |
ccattagtagaagcccaatgtaatccgcttcaaattcacacctgtaaattgtga |
72 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| ||||| ||||| ||||||||| |
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| T |
1175490 |
ccatcagtagaagcccaatgtaatcagcttcatattcaaacctgcaaattgtga |
1175437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 29088883 - 29088936
Alignment:
| Q |
19 |
ccattagtagaagcccaatgtaatccgcttcaaattcacacctgtaaattgtga |
72 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| | ||| ||||||||| |
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| T |
29088883 |
ccattagtagaagcccaatgtaatcaacttcaaattcaaaactgcaaattgtga |
29088936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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