View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10082_low_3 (Length: 280)

Name: NF10082_low_3
Description: NF10082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10082_low_3
NF10082_low_3
[»] chr1 (2 HSPs)
chr1 (19-273)||(50531872-50532126)
chr1 (21-233)||(50533612-50533834)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 50532126 - 50531872
Alignment:
Q  19 agattctttgtcgatacaaacccaggcttgtaaagtttatataacgttaaaggtgaaacaaactatgtgctgcttttaggctgtaagggtttggcaccat 118  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  50532126 agattctttgtcgatacaaacccaggcttgtaaactttatataacgttaaaggtgaaacaaactatgtgctgcttttaggttgtaagggtttggcaccat 50532027  T
Q  119 tgacagttggtttgcttgaatcaatctctgccatggtttccggtcggttacggtttcaactttgaattttcacatgaagccaaccattgaaattaaacac 218  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50532026 tgacagttggcttgcttgaatcaatctctgccatggtttccggtcggttacggtttcaactttgaattttcacatgaagccaaccattgaaattaaacac 50531927  T
Q  219 ctgggttttattcatacccttcattcaatatcctcttctcttctctgctcctcct 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50531926 ctgggttttattcatacccttcattcaatatcctcttctcttctcttctcctcct 50531872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 50533834 - 50533612
Alignment:
Q  21 attctttgtcgatacaaacccaggcttgtaaagtttatataacgt-----taaaggtgaaacaaactatgtgctg-----------cttttaggctgtaa 104  Q
    |||||||||| |||||||||||| ||||| || ||| ||||||||     |||||||||||||||||||||||||           |||||||| ||||     
T  50533834 attctttgtcaatacaaacccagacttgttaactttttataacgtaacgttaaaggtgaaacaaactatgtgctgatatacataaacttttaggttgtat 50533735  T
Q  105 gggtttggcaccattgacagttggtttgcttgaatcaatctctgccatggtttccggtcggttacggtttcaactttgaattttcacatgaagccaacca 204  Q
     |||||| |||| || |||||||| |||||||||||    |||||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  50533734 aggtttgtcacctttcacagttggcttgcttgaatc----tctgccatggtt-ccggtcggttagggtttcacctt-gaattttcacatgaagccaacca 50533641  T
Q  205 ttgaaattaaacacctgggttttattcat 233  Q
    ||||||||||| |||  ||||||||||||    
T  50533640 ttgaaattaaataccccggttttattcat 50533612  T

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