View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10083_low_4 (Length: 204)
Name: NF10083_low_4
Description: NF10083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10083_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 20513042 - 20512887
Alignment:
| Q |
19 |
taatatacatataaaatatgataaagtaatgtaatcaaagacctaagtagctatgtgtacgttattcaggaaaactggactatggaatacacaagactca |
118 |
Q |
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| T |
20513042 |
taatatacatataaaatatgataaagtaatgtaatcaaagacctaagtagctatgtgtacgttattcaggaaaactggacgatggaatacacaagactca |
20512943 |
T |
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| Q |
119 |
aggcaaagattgagcttttgcagagaaaccacaggtatagctcttctagtgtactc |
174 |
Q |
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| T |
20512942 |
aggcaaaggttgagcttttgcagagaaaccacaggtatagctcttctagtgtactc |
20512887 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 27524157 - 27524085
Alignment:
| Q |
85 |
caggaaaactggactatggaatacacaagactcaaggcaaagattgagcttttgcagagaaaccacaggtata |
157 |
Q |
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| T |
27524157 |
cagggaaactggactattgagtatacgcgactgaaggcaaagattgatcttttgcaaagaaactataggtata |
27524085 |
T |
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