View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10084_low_11 (Length: 280)
Name: NF10084_low_11
Description: NF10084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10084_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 31290148 - 31290370
Alignment:
| Q |
1 |
atagcattctttctcttcaatggagactattacaccgtgaacaaaatgaggatattatatagcttagatagataacttgtagtacaagttatcttagtgt |
100 |
Q |
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| T |
31290148 |
atagcattctttctcttctatggagactattacaccatgagcaaaatgaggatattatatagcttagatag-----------tacaagttatcttagtgt |
31290236 |
T |
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| Q |
101 |
agtactatagagtagtacattctattttactagtacttgtatgctcactatataagctaattttgctcatggtgtaattttgagtcaggttagttgttgt |
200 |
Q |
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| T |
31290237 |
agtactatagagtagtacattctattttactagtacttgtatgctcactatataagctaattttgctcatggtgtaattttgagtcaggttagttgttgt |
31290336 |
T |
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| Q |
201 |
tttatcttgcaatatatagtgtttgatactgaca |
234 |
Q |
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| T |
31290337 |
tttatcttgcaatatatagtgtttgatactgaca |
31290370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 26952498 - 26952546
Alignment:
| Q |
180 |
ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata |
228 |
Q |
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| T |
26952498 |
ttgagtcaggtttgttgttgttttatcttgcaatatatagtatttgata |
26952546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 26961991 - 26962039
Alignment:
| Q |
180 |
ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata |
228 |
Q |
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| T |
26961991 |
ttgagtcaggtttgttgttgttttatcttgcaatatatagtatttgata |
26962039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 26980289 - 26980337
Alignment:
| Q |
180 |
ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata |
228 |
Q |
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| T |
26980289 |
ttgagtcaggtttgttgttgttttattttgcaatatatagtatttgata |
26980337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 26649356 - 26649393
Alignment:
| Q |
180 |
ttgagtcaggttagttgttgttttatcttgcaatatat |
217 |
Q |
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| T |
26649356 |
ttgagtcaggttcgttgttgttttatcttgcaatatat |
26649393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 26755324 - 26755361
Alignment:
| Q |
180 |
ttgagtcaggttagttgttgttttatcttgcaatatat |
217 |
Q |
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| T |
26755324 |
ttgagtcaggttcgttgttgttttatcttgcaatatat |
26755361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 91
Target Start/End: Original strand, 18008612 - 18008642
Alignment:
| Q |
61 |
agcttagatagataacttgtagtacaagtta |
91 |
Q |
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| T |
18008612 |
agcttagatagataacttgtagtacaagtta |
18008642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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