View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10084_low_14 (Length: 251)

Name: NF10084_low_14
Description: NF10084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10084_low_14
NF10084_low_14
[»] chr4 (5 HSPs)
chr4 (19-251)||(48912520-48912752)
chr4 (22-251)||(48965104-48965333)
chr4 (58-251)||(48957955-48958148)
chr4 (22-112)||(48967233-48967323)
chr4 (191-251)||(48974062-48974122)
[»] scaffold0536 (3 HSPs)
scaffold0536 (19-251)||(6686-6918)
scaffold0536 (42-251)||(10668-10877)
scaffold0536 (189-231)||(1648-1690)
[»] chr5 (2 HSPs)
chr5 (19-209)||(28385106-28385296)
chr5 (19-227)||(12540457-12540665)
[»] chr2 (2 HSPs)
chr2 (22-209)||(13439975-13440162)
chr2 (22-112)||(13448138-13448228)
[»] chr8 (1 HSPs)
chr8 (37-112)||(12641795-12641870)
[»] chr6 (1 HSPs)
chr6 (187-251)||(12590347-12590411)
[»] chr7 (1 HSPs)
chr7 (19-209)||(3417744-3417934)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 48912752 - 48912520
Alignment:
Q  19 gaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912752 gaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttca 48912653  T
Q  119 caaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912652 caaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcac 48912553  T
Q  219 ctgtgttatcaacttctcattgtaaaattgttc 251  Q
    ||||||||||||||||||||||||||| |||||    
T  48912552 ctgtgttatcaacttctcattgtaaaactgttc 48912520  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 251
Target Start/End: Original strand, 48965104 - 48965333
Alignment:
Q  22 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaa 121  Q
    |||||||||| ||| ||  || |||| || || ||||||||| ||||| |   ||| |||||||||||||||||||||||||||||||||| | |||||     
T  48965104 ccaccttcttgaatggctcgtctagccttttctccaaactcttgagcacgacttctaattttctcagcttcatcaccactgtccatcaatctcctcacag 48965203  T
Q  122 ccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctg 221  Q
    ||||||| ||  |||| || |  |||| ||||||||||||  ||| ||||||    | |||||| |||||||| || ||||| ||||||||  |||| |     
T  48965204 ccttctctatgctatcactactcaccagcttctctctttcttcaaaaccagtcaaacaccattctgttgcaccaacttccactccaatccctcgcacttc 48965303  T
Q  222 tgttatcaacttctcattgtaaaattgttc 251  Q
    ||||||||  || || ||||| ||||||||    
T  48965304 tgttatcagtttttcgttgtagaattgttc 48965333  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 251
Target Start/End: Original strand, 48957955 - 48958148
Alignment:
Q  58 aactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctc 157  Q
    |||||| ||||| | ||| |||||| ||||||||||||||||| ||||||||||| ||||||| |||| || ||| ||||  | |  || | ||||| |     
T  48957955 aactcttgagcacgctgtttgatttcctcagcttcatcaccaccgtccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtt 48958054  T
Q  158 tttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttc 251  Q
    | ||| ||| |||  ||   | ||| || |||||||| |||||||||||||| ||  |||| |  |||||||||||||||||||| ||||||||    
T  48958055 tctcctcaaaaccgtttacacaccactctgttgcaccaacctccaccccaattcctcgcacattagttatcaacttctcattgtagaattgttc 48958148  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 48967233 - 48967323
Alignment:
Q  22 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 112  Q
    |||||||||| || |||  || |||| || || ||||| ||||||||| |||||||||| ||||||||||||||  || ||||||||||||    
T  48967233 ccaccttcttgaagtgctcgtgtagccttttctccaaagtctcgagcacgttgtctgatcttctcagcttcatcgtcattgtccatcaatc 48967323  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 48974062 - 48974122
Alignment:
Q  191 caccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttc 251  Q
    |||| |||||||| ||||| ||  ||||||| |||||||||||||| ||||| ||||||||    
T  48974062 caccaacctccacaccaataccccgcacctgagttatcaacttctcgttgtagaattgttc 48974122  T

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Target: scaffold0536 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 6918 - 6686
Alignment:
Q  19 gaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttca 118  Q
    ||||||||||||| |   ||||||||||| || |||||||||||||||||||  | | |||||||||||||||| |||||||  |||||||||| | |||    
T  6918 gaaccaccttcttgagccgcatgtttagccttatccccaaactctcgagcatactttttgattttctcagcttcgtcaccaccatccatcaatctcctca 6819  T
Q  119 caaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcac 218  Q
    || ||||||||||| |||||||||  |||||||||||||| ||||||||||||||||  ||||| || | ||| || ||| |||||||||| |   ||||    
T  6818 cagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccaccaccccaattcgtcgcac 6719  T
Q  219 ctgtgttatcaacttctcattgtaaaattgttc 251  Q
    ||||||||||||||| |||||||||||||||||    
T  6718 ctgtgttatcaacttttcattgtaaaattgttc 6686  T

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Target: scaffold0536; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 42 - 251
Target Start/End: Complemental strand, 10877 - 10668
Alignment:
Q  42 tttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctc 141  Q
    |||||| || ||||||||||||||||||||| |||||||| |||||||| ||| || | |||||||||||| |||||||||||||||||||  |||||||    
T  10877 tttagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccatcaatctcttcacaaccttctcaataccatccctc 10778  T
Q  142 caaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgt 241  Q
    |  |||| ||||||| | ||||||||||||  |  || ||| ||   |||||| || ||| ||||||||||  |||| || |||||||||||||||||||    
T  10777 ccgaccaacttctctttctccccaataccaactaagcaccactctactgcacccacttcccccccaatcccccgcacttgcgttatcaacttctcattgt 10678  T
Q  242 aaaattgttc 251  Q
    ||||||||||    
T  10677 aaaattgttc 10668  T

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Target: scaffold0536; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 1690 - 1648
Alignment:
Q  189 tgcaccgacctccaccccaatcccatgcacctgtgttatcaac 231  Q
    ||||||||| ||||| ||||||||||||||||| |||||||||    
T  1690 tgcaccgacttccactccaatcccatgcacctgagttatcaac 1648  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 28385106 - 28385296
Alignment:
Q  19 gaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttca 118  Q
    ||||||||||||||||  ||  || |||| ||||| || |||||||||||| ||||||| || || ||||||||||| |||| ||||||||||  | |||    
T  28385106 gaaccaccttctttaacagctcgtgtagccttctctcctaactctcgagcacgttgtctcatattttcagcttcatcgccaccgtccatcaatttcctca 28385205  T
Q  119 caaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaat 209  Q
     | ||||||| || ||||| || |  |||| ||||| ||| |||||| ||||| |||| | |||||||||| |||| || ||||| |||||    
T  28385206 tagccttctctatgttatctctgctcaccaacttctttctctccccattaccatttgtacaccattccgttacacctacttccactccaat 28385296  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 12540457 - 12540665
Alignment:
Q  19 gaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttca 118  Q
    ||||||||||||| ||  ||  || |||| ||||| |||| |||||| ||| || |||| || || |||||||||| |||||  |||||||||| | |||    
T  12540457 gaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtagtctcatattttcagcttcataaccaccatccatcaatctcctca 12540556  T
Q  119 caaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcac 218  Q
     | ||||||| ||   ||| || | ||||| ||||| ||| |||||| ||||| |||| | |||||| |||||||| || || || ||||| ||  | ||    
T  12540557 tagccttctctatgccatctctgccaaccaacttctttctctccccattaccatttgtacaccattctgttgcacctacttctactccaattcctcggac 12540656  T
Q  219 ctgtgttat 227  Q
    |||||||||    
T  12540657 ctgtgttat 12540665  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 13439975 - 13440162
Alignment:
Q  22 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaa 121  Q
    |||||||||| ||| || ||| |||| || || ||||||||| ||||| || | || || || | ||||||||||||| | |||||||||| | |||||     
T  13439975 ccaccttcttgaatagcttgtgtagccttttctccaaactcttgagcaagtagcctcatatttttagcttcatcaccattctccatcaatctcctcacag 13440074  T
Q  122 ccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaat 209  Q
    ||||||| || |||||||| |  |||| ||||||||| ||| ||| |||| |  | | |||||||||||||||||| ||||| |||||    
T  13440075 ccttctctatgttatccctgctcaccaacttctctctctccgcaacaccattcttacaccattccgttgcaccgacttccactccaat 13440162  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 13448138 - 13448228
Alignment:
Q  22 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 112  Q
    |||||||||| ||| || ||| ||||||| || ||||||||||||||| || | ||||| || |||||||||||||||| |||||||||||    
T  13448138 ccaccttcttgaatagcttgtatagctttttctccaaactctcgagcacgtagcctgatattttcagcttcatcaccaccgtccatcaatc 13448228  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 12641870 - 12641795
Alignment:
Q  37 gcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 112  Q
    |||||| |||| || | |||||||||| ||||| |||||||||||| || |||||||||||||  |||||||||||    
T  12641870 gcatgtgtagcctttttcccaaactcttgagcacgttgtctgatttccttagcttcatcaccatcgtccatcaatc 12641795  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 12590411 - 12590347
Alignment:
Q  187 gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttc 251  Q
    |||||||| || ||||| ||||| |||||||| |  ||||||||||||||||||||||| |||||    
T  12590411 gttgcaccaacttccactccaattccatgcacatcagttatcaacttctcattgtaaaaatgttc 12590347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 3417934 - 3417744
Alignment:
Q  19 gaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttca 118  Q
    ||||||||||||| ||| ||  ||||||| ||||| |||| |||||||||| || |||| ||    ||||| ||||||| |||||||||||||| | |||    
T  3417934 gaaccaccttcttgaatagctcgtttagccttctctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctca 3417835  T
Q  119 caaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaat 209  Q
       ||||||| || | ||| || |  |||| ||||| ||| ||||||||||||  ||  | |||||| |||||||| || ||||| |||||    
T  3417834 ttgccttctctatgtcatctctgctcaccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaat 3417744  T

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