View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10084_low_2 (Length: 596)
Name: NF10084_low_2
Description: NF10084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10084_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 5051817 - 5051458
Alignment:
| Q |
20 |
aacttatcagatgatatatggatggagatatggagtcgtgtccatacaagacaggagtgagatgcaaatccatcgcaaagcgcttctta------atctc |
113 |
Q |
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| T |
5051817 |
aacttatcagatgatatatggatggagatatggagtcgtgtccatacaagacaggagtgagatgcaaatccatcgcaaagcgcttcttagcaataatctc |
5051718 |
T |
|
| Q |
114 |
acagctccaattcaatgaacgatcagtttttcatcaccaatatactttggtccaacaaatgaaagaagaa---aaccagaaaagtagcacttcaatttta |
210 |
Q |
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| T |
5051717 |
acagctccaattcaatgaacggccagttcttcatcaccaatatactttggtccaacaaatgaaagaagaagaaaaccagaaaagtagcacttcaatttta |
5051618 |
T |
|
| Q |
211 |
tctcaaagcataaactcctcgtatcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgacct |
310 |
Q |
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| T |
5051617 |
tctcaaagcgtaaactcctcgtatggttctcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccc |
5051518 |
T |
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| Q |
311 |
taaactcagcaatataacaagat-aaatcatccttatattcgagaattgttggattttca |
369 |
Q |
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| T |
5051517 |
taaactcgacaatataacaagataaaatcatccttatattcgagaattgttggattttca |
5051458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 425 - 584
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
425 |
acatcctcacgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgtactcgaaggcttcgtttgcgaac |
524 |
Q |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
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| Q |
525 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
584 |
Q |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
5051299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 23 - 584
Target Start/End: Original strand, 51273554 - 51274120
Alignment:
| Q |
23 |
ttatcagatgatatatggatggagatatggagtcgtgtc-catacaagacaggagtgagatgcaaatccatcgcaaagcgcttctta------atctcac |
115 |
Q |
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| T |
51273554 |
ttatcagatgatttattgatagagatatggagtcgtgtttcgtacaagacagcagtgagttgcaaatccatctcaaagcgtttcttagctttaatctcac |
51273653 |
T |
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| Q |
116 |
agctccaattcaatgaacgatcagtttttcatcaccaatatactttggtccaacaaatgaaagaa---gaaaaccagaaaag-tagcacttcaattttat |
211 |
Q |
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| T |
51273654 |
agctccaattcattgaacgatcaattcttcatcacca---tactttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttat |
51273750 |
T |
|
| Q |
212 |
ctcaaagcataaactcctcgtatcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgacctt |
311 |
Q |
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| T |
51273751 |
ctcaaagcgtaaacttctcatttcgttctcaccaaatctcaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcct |
51273850 |
T |
|
| Q |
312 |
aaactcagcaatataacaagataaat-catc-cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaaaaccatacatggtagag |
409 |
Q |
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| T |
51273851 |
aaacttgacaatataacaagaaaaaaacatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagag |
51273950 |
T |
|
| Q |
410 |
tctaccatgtatgcaacatcctcacgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgtactcgaag |
509 |
Q |
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| T |
51273951 |
tctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtca-caataaacgtgaccgtgtactagaag |
51274049 |
T |
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| Q |
510 |
gcttcgtttgcgaaccttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
584 |
Q |
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| T |
51274050 |
gctttgtttgtgaacctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
51274120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 234 - 465
Target Start/End: Original strand, 14907802 - 14908035
Alignment:
| Q |
234 |
tcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccttaaactcagcaatataacaagat |
333 |
Q |
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| T |
14907802 |
tcgttctcacccaatctcaatctttctactcctgaaaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataacaagaa |
14907901 |
T |
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| Q |
334 |
aa-atcatc-cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaaaaccatacatggtagagtctaccatgtatgcaacatcct |
431 |
Q |
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| T |
14907902 |
aataaaatgtcttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaacatcct |
14908001 |
T |
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| Q |
432 |
cacgaaagattggatcaaacttccactccctcca |
465 |
Q |
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||| |||||| |||||||| |||||||||||||| |
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| T |
14908002 |
cacaaaagataggatcaaatttccactccctcca |
14908035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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