View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10084_low_3 (Length: 587)
Name: NF10084_low_3
Description: NF10084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10084_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Original strand, 28082228 - 28082802
Alignment:
| Q |
1 |
aataatgaggcaaggaaaacgtgtttaggaataaattgatttttgattaaaacattatatcactgtcttggatgaggacataaaccctgctgtacataga |
100 |
Q |
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| T |
28082228 |
aataatgaggcaaggaaaacgtgtttaggaataaattgatttttgattacaatattatatcattgtcttggatgaggacataaaccctgctgtacataga |
28082327 |
T |
|
| Q |
101 |
caagtgggtgggttcaatattaggcatgtgaaaaatacacaccccaacaaagtttatggtccctacatagtgctggtggttcatttcatttaatatattc |
200 |
Q |
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| T |
28082328 |
caagtgggtgggttcaatattaggcatgtgaaaaatacacaccccaacaaagtttatggtccctacatagtgctggtggttcatttcatttaatatattc |
28082427 |
T |
|
| Q |
201 |
agtgttactttgctacannnnnnnatggttttggtgtactctattagacctctagtttannnnnnncctgttcaagtatctaaaggtttgaccctaccaa |
300 |
Q |
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| T |
28082428 |
agtgttactttgctacatttttttatggttttggtgtactctattagacctctagtttatttttttcctgttcaagtatctaaaggtttgaccctaccaa |
28082527 |
T |
|
| Q |
301 |
ctttgcatatgaaaatatactccgacatgaatggtagtattatagggagagnnnnnnnnngaagg-------ttttccttgacacaaagtaacccaattt |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
28082528 |
ctttgcatatgaaaatatactccgacatgaatggtagtattatagggagagaaaaaaaaagaaggtattcaattttccttgacacaaagtaacccaattt |
28082627 |
T |
|
| Q |
394 |
agatgtgtagtgtataaggctcttcccatatatatatgtgtccattgaaacccaaccaatggaatggatatccaccaatttgaatatgttaaggaatttt |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
28082628 |
agatgtgtagtgtataaggctcttcccatatatatatgtgtcaattgaaacccaaccaatggaat--ccatgcaccaatttgaatatgttaaggaatttt |
28082725 |
T |
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| Q |
494 |
cacatcttcaactcaaaagataaaaagatgccgagacatttgatatgttgaagtaaagacttgaatttacaagtctt |
570 |
Q |
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| T |
28082726 |
cacatcttcaactctaaagataaaaagatgccaagatatttgatatgttgaagtaaagacttgaatttacaagtctt |
28082802 |
T |
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