View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10084_low_4 (Length: 422)

Name: NF10084_low_4
Description: NF10084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10084_low_4
NF10084_low_4
[»] chr2 (22 HSPs)
chr2 (8-178)||(6974519-6974689)
chr2 (326-405)||(6974283-6974362)
chr2 (97-178)||(4382213-4382294)
chr2 (90-180)||(37060079-37060169)
chr2 (90-178)||(21423364-21423452)
chr2 (92-178)||(27004450-27004536)
chr2 (90-178)||(5958965-5959053)
chr2 (93-178)||(30609688-30609773)
chr2 (92-180)||(10217355-10217443)
chr2 (90-178)||(13274200-13274287)
chr2 (90-176)||(24475936-24476022)
chr2 (90-176)||(28107492-28107578)
chr2 (95-178)||(15070392-15070475)
chr2 (90-178)||(37140129-37140224)
chr2 (92-175)||(30393597-30393680)
chr2 (91-178)||(37802838-37802925)
chr2 (92-178)||(5807322-5807407)
chr2 (90-178)||(14786239-14786321)
chr2 (92-172)||(22194291-22194371)
chr2 (115-179)||(27969511-27969575)
chr2 (119-178)||(7747947-7748006)
chr2 (131-178)||(30757186-30757233)
[»] chr4 (14 HSPs)
chr4 (90-178)||(35929706-35929794)
chr4 (93-178)||(21555382-21555467)
chr4 (92-174)||(56100144-56100226)
chr4 (90-178)||(36609415-36609504)
chr4 (93-178)||(12701040-12701125)
chr4 (102-178)||(827840-827916)
chr4 (90-178)||(23249469-23249557)
chr4 (91-178)||(19598367-19598454)
chr4 (91-178)||(35749385-35749472)
chr4 (92-175)||(41842789-41842871)
chr4 (116-178)||(27733401-27733463)
chr4 (90-178)||(44243698-44243786)
chr4 (92-128)||(53584618-53584654)
chr4 (140-178)||(53583473-53583511)
[»] scaffold0306 (1 HSPs)
scaffold0306 (90-178)||(13058-13146)
[»] scaffold0152 (1 HSPs)
scaffold0152 (90-178)||(22181-22269)
[»] chr6 (11 HSPs)
chr6 (94-178)||(2814892-2814976)
chr6 (90-178)||(6200164-6200252)
chr6 (92-178)||(444522-444608)
chr6 (91-176)||(23774069-23774154)
chr6 (94-178)||(24640354-24640438)
chr6 (92-178)||(1067801-1067888)
chr6 (94-178)||(26393991-26394075)
chr6 (109-172)||(2993592-2993655)
chr6 (115-178)||(34710135-34710198)
chr6 (140-178)||(4032329-4032367)
chr6 (90-128)||(12324171-12324209)
[»] chr5 (18 HSPs)
chr5 (90-178)||(41929340-41929428)
chr5 (90-178)||(3729335-3729423)
chr5 (92-176)||(9913803-9913887)
chr5 (92-178)||(20736160-20736246)
chr5 (90-178)||(34766886-34766974)
chr5 (91-178)||(8159072-8159159)
chr5 (95-178)||(21583853-21583936)
chr5 (92-178)||(39508318-39508404)
chr5 (94-178)||(21020686-21020770)
chr5 (93-178)||(9793637-9793722)
chr5 (90-178)||(9793734-9793822)
chr5 (92-176)||(3711183-3711271)
chr5 (90-169)||(25081766-25081845)
chr5 (90-169)||(25139735-25139814)
chr5 (91-178)||(2068963-2069046)
chr5 (98-174)||(20815677-20815753)
chr5 (117-178)||(41910220-41910281)
chr5 (140-178)||(38451041-38451079)
[»] chr8 (18 HSPs)
chr8 (91-178)||(4623852-4623939)
chr8 (91-175)||(3001382-3001466)
chr8 (94-175)||(23403601-23403682)
chr8 (90-178)||(16655977-16656065)
chr8 (94-178)||(30204650-30204734)
chr8 (92-178)||(41787497-41787583)
chr8 (92-176)||(14842309-14842393)
chr8 (90-178)||(37630001-37630089)
chr8 (91-178)||(21567707-21567794)
chr8 (90-163)||(22798540-22798613)
chr8 (94-178)||(36470137-36470222)
chr8 (90-174)||(4234177-4234261)
chr8 (94-178)||(39436844-39436928)
chr8 (98-176)||(29958518-29958596)
chr8 (94-175)||(23275532-23275613)
chr8 (94-176)||(36046533-36046614)
chr8 (91-128)||(4414226-4414263)
chr8 (92-175)||(45310021-45310103)
[»] chr7 (6 HSPs)
chr7 (91-178)||(8163645-8163732)
chr7 (91-178)||(40337068-40337155)
chr7 (92-178)||(41326042-41326128)
chr7 (110-178)||(28089153-28089221)
chr7 (91-178)||(2362384-2362471)
chr7 (93-175)||(35589412-35589494)
[»] chr3 (15 HSPs)
chr3 (94-178)||(36404224-36404308)
chr3 (90-178)||(37115889-37115977)
chr3 (90-178)||(46487269-46487356)
chr3 (89-180)||(35534480-35534571)
chr3 (92-178)||(39391958-39392044)
chr3 (91-178)||(45602984-45603071)
chr3 (90-178)||(29360481-29360569)
chr3 (90-176)||(52742351-52742437)
chr3 (90-174)||(14201716-14201798)
chr3 (94-178)||(48944107-48944191)
chr3 (103-175)||(16353494-16353566)
chr3 (105-178)||(3618342-3618415)
chr3 (110-179)||(48644540-48644609)
chr3 (110-178)||(54882994-54883062)
chr3 (140-178)||(47599413-47599451)
[»] chr1 (16 HSPs)
chr1 (90-180)||(24909508-24909598)
chr1 (94-175)||(571650-571731)
chr1 (90-178)||(3695405-3695493)
chr1 (90-178)||(11121856-11121944)
chr1 (90-178)||(39001946-39002034)
chr1 (90-178)||(6750312-6750400)
chr1 (90-178)||(41998881-41998969)
chr1 (92-175)||(794914-794997)
chr1 (112-178)||(36290612-36290678)
chr1 (90-175)||(26653945-26654030)
chr1 (94-178)||(18808781-18808865)
chr1 (92-175)||(44272362-44272446)
chr1 (90-155)||(4792593-4792658)
chr1 (90-169)||(1585859-1585938)
chr1 (118-178)||(7409825-7409885)
chr1 (92-127)||(9224877-9224912)
[»] scaffold0140 (1 HSPs)
scaffold0140 (90-178)||(21475-21563)
[»] scaffold0025 (1 HSPs)
scaffold0025 (85-179)||(67866-67960)
[»] scaffold0302 (1 HSPs)
scaffold0302 (90-178)||(18505-18593)
[»] scaffold0121 (1 HSPs)
scaffold0121 (94-178)||(37405-37489)
[»] scaffold0532 (1 HSPs)
scaffold0532 (92-178)||(11320-11406)
[»] scaffold1248 (1 HSPs)
scaffold1248 (93-178)||(970-1055)
[»] scaffold0952 (1 HSPs)
scaffold0952 (93-178)||(1258-1343)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 6974689 - 6974519
Alignment:
Q  8 gagcagagaagttattagaataaattttatagnnnnnnntgagagatttttctgaaaatgtaaagttacaaaattaaatgaccctgtttgaaatagtttt 107  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6974689 gagcagagaagttattagaataaattttatagaaaaacatgagagatttttctgaaaatgtaaagttacaaaattaaatgaccctgtttgaaatagtttt 6974590  T
Q  108 tattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    | ||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  6974589 tgttttcagtttttgaaatatataagtgctcttctcacaatagttatcattttacatgttttagttttagt 6974519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 326 - 405
Target Start/End: Complemental strand, 6974362 - 6974283
Alignment:
Q  326 ggcaatataaagggttttgcaagagcttatttgaatttttctcctgacatgaatattttaaatatttagaacaacttact 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6974362 ggcaatataaagggttttgcaagagcttatttgaatttttctcctgacatgaatattttaaatatttagaacaacttact 6974283  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 4382213 - 4382294
Alignment:
Q  97 gaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||| |||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||    
T  4382213 gaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcattttacatgttttagttttagt 4382294  T

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Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 37060169 - 37060079
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagttc 180  Q
    ||||||||||||||||||| |||||||||||||||||||  || | ||| |||||||||||||||| ||||||||||||||||||||||||    
T  37060169 cctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttacatgttttagttttagttc 37060079  T

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Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 21423364 - 21423452
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| |||||||||||||||||||  ||||  ||||||||||||||||||| | ||||||||||||||||||||    
T  21423364 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcatctcacaatagttatcctattacatgttttagttttagt 21423452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 27004450 - 27004536
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||| |||||| |||||||||||| ||||| ||| |||||||||||||||| ||||| ||||||||||||||||    
T  27004450 tgtttgaaatagtttttgttttcaatttttgaaatatataagtcctcttctcacaatagttatccttttatatgttttagttttagt 27004536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 5958965 - 5959053
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| |||||||||||||||||||  |||| ||| ||||  |||||||||| ||||||||||||||||||||||    
T  5958965 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcgtaatagttatccttttacatgttttagttttagt 5959053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 30609773 - 30609688
Alignment:
Q  93 gtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||| |||||| ||||||||| |||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||    
T  30609773 gtttgaaatcgtttttgttttcagttattgaaatatacaagtcttcttctcacaatagttatcattttacatgttttagttttagt 30609688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 10217443 - 10217355
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagttc 180  Q
    |||||||||||||||||||||||||||||||||||||  |||||| | | | | |||||||||  ||||||||||||||||||||||||    
T  10217443 tgtttgaaatagtttttattttcagtttttgaaatatacaagttccctttttagaatagttattcttttacatgttttagttttagttc 10217355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 13274200 - 13274287
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| |||| | ||||||||||||  |||| ||| |||||||||||||||| ||||||||||||||||||||||    
T  13274200 cctgtttgaaatagtttttgtttttaatttttgaaatatacaagtcctcttctcacaatagttatc-ttttacatgttttagttttagt 13274287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 24476022 - 24475936
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttta 176  Q
    ||||||||||||||||||| |||||||||||||||||||  || |  || | |||||||||||||| ||||||||||||||||||||    
T  24476022 cctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcttcttatcacaatagttatctttttacatgttttagtttta 24475936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 28107578 - 28107492
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttta 176  Q
    ||||||||||| | ||||| |||||||||||||||||||  || | ||| |||||||||||||||| ||||||||||||||||||||    
T  28107578 cctgtttgaaacaatttttgttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttacatgttttagtttta 28107492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 15070475 - 15070392
Alignment:
Q  95 ttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||| |||||||||||||||||||  || | ||| |||||||||||||||| ||||| ||||||| ||||||||    
T  15070475 ttgaaatagtttttgttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttatatgtttttgttttagt 15070392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 37140224 - 37140129
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagtt-------atcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| |||||||||||||||||||  |||| ||| |||| ||||||||       ||||||||||||||||||||||||||    
T  37140224 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcgcaatagttatcacttatcattttacatgttttagttttagt 37140129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 30393680 - 30393597
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttt 175  Q
    ||||||||||||||||| |||||||||||||||||||  |||| ||| | | | ||| |||||| |||||||||||||||||||    
T  30393680 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttttgataatggttatccttttacatgttttagtttt 30393597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 37802925 - 37802838
Alignment:
Q  91 ctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||||| |||| | ||||||||||||  ||||  || ||||| |||| ||||| ||||||||||||||||||||||    
T  37802925 ctgtttgaaatagtttttgttttaaatttttgaaatatacaagtcttcttctcataatatttatctttttacatgttttagttttagt 37802838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 5807407 - 5807322
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||| ||| |||||||||||||||  || ||| | | |||||||||||||| ||||| ||||||||||||||||    
T  5807407 tgtttgaaatagtttttgttt-cagtttttgaaatatacaaattcccttttcacaatagttatccttttatatgttttagttttagt 5807322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 14786239 - 14786321
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| |||||      ||||||||  |||| ||| |||||||||||||||| | ||||||||||||||||||||    
T  14786239 cctgtttgaaatagtttttgttttc------tgaaatatacaagtcctcttctcacaatagttatcctattacatgttttagttttagt 14786321  T

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Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 22194371 - 22194291
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagt 172  Q
    ||||||||||||||||| ||||  |||||||||||||  |||| ||  | | | |||||||||||||||||||||||||||    
T  22194371 tgtttgaaatagtttttgtttttggtttttgaaatatacaagtcctttttttataatagttatcattttacatgttttagt 22194291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 27969511 - 27969575
Alignment:
Q  115 agtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagtt 179  Q
    ||||||||||||||  |||||| | |||||||||||||||| ||||| |||||||| ||||||||    
T  27969511 agtttttgaaatatacaagttcacttctcacaatagttatccttttatatgttttaattttagtt 27969575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 7748006 - 7747947
Alignment:
Q  119 tttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||  |||| ||| ||| |||| ||||||||||||||||||||||||||||||    
T  7748006 tttgaaatatacaagtcctcttcttacaagagttatcattttacatgttttagttttagt 7747947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 30757233 - 30757186
Alignment:
Q  131 aagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||| ||| |||||||||||||||| ||||||||||||||||||||||    
T  30757233 aagtcctcttctcacaatagttatccttttacatgttttagttttagt 30757186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 35929706 - 35929794
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||||||||||    
T  35929706 cctgtttgaaatagtttttgttttcagtttttgaaatatataagtcctcttctcacaatagttatcattttatatgttttagttttagt 35929794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 21555382 - 21555467
Alignment:
Q  93 gtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||| ||||||||||||||||||| |||||  || |||||||||||||||| ||||||||||||||||||||||    
T  21555382 gtttgaaatagtttttgttttcagtttttgaaatatataagtcttcttctcacaatagttatccttttacatgttttagttttagt 21555467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 56100226 - 56100144
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttt 174  Q
    ||||||||||||||||| |||||||||||||||||||  |||| ||| |||| ||||||||||| ||||||||||||||||||    
T  56100226 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcgcaatagttatccttttacatgttttagttt 56100144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 36609504 - 36609415
Alignment:
Q  90 cctgtttgaaatagtttttatttt-cagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| |||| |||||||||||||||  || | ||| |||||||||||||||| ||||||||||||||||||||||    
T  36609504 cctgtttgaaatagtttttgtttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttacatgttttagttttagt 36609415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 12701040 - 12701125
Alignment:
Q  93 gtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||| |||||||||||||||||||  ||||  || ||| |||||||||||  ||||||||||||||||||||||    
T  12701040 gtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttcttacaatagttattcttttacatgttttagttttagt 12701125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 827840 - 827916
Alignment:
Q  102 agtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||| ||||| |||||||||||||  |||| ||| |||||||||||||||| ||||||||||||||||||||||    
T  827840 agtttttgttttcggtttttgaaatatacaagtcctcttctcacaatagttatctttttacatgttttagttttagt 827916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 23249469 - 23249557
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||| | ||||| ||||| |||||||||||||  |||  ||| |||||||||||||||| ||||||||||||||||||||||    
T  23249469 cctgtttgaaacaatttttgttttcggtttttgaaatatacaagccctcttctcacaatagttatccttttacatgttttagttttagt 23249557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 19598367 - 19598454
Alignment:
Q  91 ctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||||| ||||||||||| |||||||  ||||  |  ||||| ||||||| || ||||||||||||||||||||||    
T  19598367 ctgtttgaaatagtttttgttttcagttttcgaaatatacaagtcattttctcaaaatagttttctttttacatgttttagttttagt 19598454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 35749385 - 35749472
Alignment:
Q  91 ctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||| |||||||||||| ||||||||||||  ||||  || ||||| |||| ||||| ||||| ||||||||||||||||    
T  35749385 ctgtttgaaataatttttattttcaatttttgaaatatacaagtcatcttctcataataattatctttttatatgttttagttttagt 35749472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 41842789 - 41842871
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttt 175  Q
    ||||||||||||||||| ||||| |||||||||||||  || | ||  ||||||||| |||||| |||||||||||||||||||    
T  41842789 tgtttgaaatagtttttgttttcggtttttgaaatatacaaatccttttctcacaattgttatc-ttttacatgttttagtttt 41842871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 27733401 - 27733463
Alignment:
Q  116 gtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||  |||  ||| |||||||||||||||| ||||||||||||||||||||||    
T  27733401 gtttttgaaatatacaagacctcttctcacaatagttatccttttacatgttttagttttagt 27733463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 44243786 - 44243698
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||  |||| |||| ||||||||||||||  ||||  || ||| |||||||||||| ||||| |||||||| |||||||    
T  44243786 cctgtttgaaataaattttgtttttagtttttgaaatatacaagtcatcttcttacaatagttatccttttatatgttttaattttagt 44243698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 53584654 - 53584618
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatat 128  Q
    ||||||||||||||||| |||||||||||||||||||    
T  53584654 tgtttgaaatagtttttgttttcagtttttgaaatat 53584618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 53583511 - 53583473
Alignment:
Q  140 tctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  53583511 tctcacaatagtaatccttttacatgttttagttttagt 53583473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 13146 - 13058
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| |||||||||||||||||||  |||| ||| |||||||||||||||| ||||||||||||||||||||||    
T  13146 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttagttttagt 13058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 22181 - 22269
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| |||||||||||||||||||  |||| ||| |||||||||||||||| ||||||||||||||||||||||    
T  22181 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttagttttagt 22269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 2814976 - 2814892
Alignment:
Q  94 tttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||| |||||||||||||||||||  |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  2814976 tttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatcattttacatgttttagttttagt 2814892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 6200252 - 6200164
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||| ||||| |||||||||||||||||||  || ||||| |||||||||||||||| |||||||| |||||||||||||    
T  6200252 cctgtttgaaatattttttgttttcagtttttgaaatatacaaattctcttctcacaatagttatccttttacatattttagttttagt 6200164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 444522 - 444608
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||| ||||||||||| |||||||||||||||||||  |||| ||| |||||||||||||||| | ||||||||||||||||||||    
T  444522 tgtttaaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatcctattacatgttttagttttagt 444608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 23774069 - 23774154
Alignment:
Q  91 ctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttta 176  Q
    ||||||||||||||||||||||| | ||||||||||||  |||||||| ||||| |||||||||| ||||| ||||||||||||||    
T  23774069 ctgtttgaaatagtttttatttttaatttttgaaatatacaagttctcttctcataatagttatccttttatatgttttagtttta 23774154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 24640438 - 24640354
Alignment:
Q  94 tttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||| |||||||||||||||||||| |||| ||| ||||| |||||||||| || || ||||||||||||||||    
T  24640438 tttgaaatagtttttgttttcagtttttgaaatatgcaagtcctcttctcataatagttatccttctatatgttttagttttagt 24640354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 1067801 - 1067888
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagtta-tcattttacatgttttagttttagt 178  Q
    ||||||||||||||||| |||||||||||||||||||  |||||||| ||||||||||||||  | ||||| ||||||||||||||||    
T  1067801 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttaccctttttatatgttttagttttagt 1067888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 26394075 - 26393991
Alignment:
Q  94 tttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||| |||||||||||||||||||  || |  || |||| ||||| ||||||||||||||||||||||||||||    
T  26394075 tttgaaatagtttttgttttcagtttttgaaatataaaaatcttcttctcgcaatatttatcattttacatgttttagttttagt 26393991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 2993655 - 2993592
Alignment:
Q  109 attttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagt 172  Q
    ||||| ||||||||||||||  |||||||| |||||||||||||||| ||||| || |||||||    
T  2993655 atttttagtttttgaaatatacaagttctcttctcacaatagttatccttttatatcttttagt 2993592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 34710135 - 34710198
Alignment:
Q  115 agtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||  |||||||| ||||||| |||||||  ||||| ||||||||||||||||    
T  34710135 agtttttgaaatatacaagttctcttctcacagtagttattcttttatatgttttagttttagt 34710198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 4032367 - 4032329
Alignment:
Q  140 tctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  4032367 tctcacaatagttatctttttatatgttttagttttagt 4032329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 128
Target Start/End: Original strand, 12324171 - 12324209
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatat 128  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  12324171 cctgtttgaagtagtttttgttttcagtttttgaaatat 12324209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 41929340 - 41929428
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||| | || ||||||||||| ||||||||||||||||||||||    
T  41929340 cctgtttgaaatagtttttgttttcagtttttgaaatatgcaagttctcttttcgcaatagttatccttttacatgttttagttttagt 41929428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 3729423 - 3729335
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| |||||||||||||||||||  |||| ||| |||||||||| ||||| ||||||||||||||||||||||    
T  3729423 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaataattatccttttacatgttttagttttagt 3729335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 9913803 - 9913887
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttta 176  Q
    ||||||||||||||||| |||| ||||||||||||||  |||||||||||||| |||||||||| ||||||||||||||||||||    
T  9913803 tgtttgaaatagtttttgtttttagtttttgaaatatacaagttctcatctcataatagttatctttttacatgttttagtttta 9913887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 20736246 - 20736160
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||| |||||| ||||||||| || ||||| ||| | |||||||||||||||||||||||||||||||||||||    
T  20736246 tgtttgaaatagtttttgttttcaatttttgaaaaatataagtcctcctttcacaatagttatcattttacatgttttagttttagt 20736160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 34766974 - 34766886
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| |||||| ||||||||||||  |||| ||| |||||||||||||||  ||||||||||||||||||||||    
T  34766974 cctgtttgaaatagtttttgttttcaatttttgaaatatacaagtcctcttctcacaatagttattcttttacatgttttagttttagt 34766886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 8159159 - 8159072
Alignment:
Q  91 ctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||||| |||||| ||||||||||||  |||| ||| |||||||||| ||||| ||||||||||||||||||||||    
T  8159159 ctgtttgaaatagtttttgttttcaatttttgaaatatacaagtcctcttctcacaataattatccttttacatgttttagttttagt 8159072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 21583853 - 21583936
Alignment:
Q  95 ttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||| |||||||||||||||||||  ||||  || ||||| |||||||||| ||||||||||||||||||||||    
T  21583853 ttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttctcataatagttatctttttacatgttttagttttagt 21583936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 39508404 - 39508318
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||| |||||||||||||||||||  ||||  |  |||||||||||||||  ||||||||||||||||||||||    
T  39508404 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtctttttctcacaatagttattcttttacatgttttagttttagt 39508318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 21020686 - 21020770
Alignment:
Q  94 tttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||| ||||||||||||||||||| |||||  || |||| ||||||||||| ||||| ||| ||||||||||||    
T  21020686 tttgaaatagtttttgttttcagtttttgaaatatataagtcttcttctcgcaatagttatccttttatatgatttagttttagt 21020770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 9793722 - 9793637
Alignment:
Q  93 gtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||| |||||||||||||||||||  || | | | | | |||||||||||| ||||||||||||||||||||||    
T  9793722 gtttgaaatagtttttgttttcagtttttgaaatatacaaatcccctttttacaatagttatccttttacatgttttagttttagt 9793637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 9793822 - 9793734
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| |||||||||||||||||||  || | | | | | |||||||||||| |||||| |||||||||||||||    
T  9793822 cctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcccctttttacaatagttatccttttacttgttttagttttagt 9793734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 3711183 - 3711271
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgt----aagttctcatctcacaatagttatcattttacatgttttagtttta 176  Q
    ||||||||||||||||| ||||||||||||||||||| |    |||||||  | |||||||||||||| ||||||||||||||| ||||    
T  3711183 tgtttgaaatagtttttgttttcagtttttgaaatatatatacaagttctattttcacaatagttatctttttacatgttttagattta 3711271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 25081766 - 25081845
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgtttt 169  Q
    ||||||||||||||||||| ||||||| |||||||||||  |||   || |||||||||||||||||||||| |||||||    
T  25081766 cctgtttgaaatagtttttgttttcaggttttgaaatatacaagccatcttctcacaatagttatcattttatatgtttt 25081845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 25139735 - 25139814
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgtttt 169  Q
    ||||||||||||||||||| ||||||| |||||||||||  |||   || |||||||||||||||||||||| |||||||    
T  25139735 cctgtttgaaatagtttttgttttcaggttttgaaatatacaagccatcttctcacaatagttatcattttatatgtttt 25139814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 2068963 - 2069046
Alignment:
Q  91 ctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||||| ||||||||||||||||||  |||||  || |||||||||| ||||| ||||  ||||||||||||||||    
T  2068963 ctgtttgaaatagtttttgttttcagtttttgaaata--taagtcttcttctcacaatatttatcttttt--atgttttagttttagt 2069046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 20815677 - 20815753
Alignment:
Q  98 aaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttt 174  Q
    ||||||||||| |||||||||||| ||||||  |||| ||  |||||||||||||||||||||| ||||||| ||||    
T  20815677 aaatagtttttgttttcagtttttaaaatatacaagtccttttctcacaatagttatcattttatatgtttttgttt 20815753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 41910281 - 41910220
Alignment:
Q  117 tttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||| ||||||  |||| ||| | |||||||||||||||||||||||||||||||||||||    
T  41910281 tttttaaaatatacaagtcctcttttcacaatagttatcattttacatgttttagttttagt 41910220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 38451079 - 38451041
Alignment:
Q  140 tctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  38451079 tctcacaatagttatccttttacatgttttagttttagt 38451041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 4623939 - 4623852
Alignment:
Q  91 ctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||||| ||||||||||||||||||| |||||  || |||||||||||||||| ||||||||||||||||||||||    
T  4623939 ctgtttgaaatagtttttgttttcagtttttgaaatatataagtcatcttctcacaatagttatccttttacatgttttagttttagt 4623852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 3001466 - 3001382
Alignment:
Q  91 ctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttt 175  Q
    ||||||||||||||||||||||||||||||||||||||  |||| ||| ||||||||| |||||| |||||||||||||||||||    
T  3001466 ctgtttgaaatagtttttattttcagtttttgaaatatacaagtcctcttctcacaatggttatctttttacatgttttagtttt 3001382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 23403601 - 23403682
Alignment:
Q  94 tttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttt 175  Q
    ||||||||||||||| |||||||||||||||||||  |||| ||| |||||||||||||||| |||||||||||||||||||    
T  23403601 tttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttagtttt 23403682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 16655977 - 16656065
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| |||||||||||| ||||||  |||   || |||||||||||||||||||||||||||||||||||||||    
T  16655977 cctgtttgaaatagtttttgttttcagtttttaaaatatacaagccttcttctcacaatagttatcattttacatgttttagttttagt 16656065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 30204734 - 30204650
Alignment:
Q  94 tttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||| |||||||||||||||||||  ||||  || |||||||||||||||| ||||||||||||||||||||||    
T  30204734 tttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttctcacaatagttatccttttacatgttttagttttagt 30204650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 41787497 - 41787583
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||| ||||||||||| |||||||||||| |||||| ||| ||||| ||| |||||||||||| ||||||||||||||||||||||    
T  41787497 tgtttaaaatagtttttgttttcagtttttaaaatatataaattctcttcttacaatagttatctttttacatgttttagttttagt 41787583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 14842309 - 14842393
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttta 176  Q
    ||||||||||| ||||| |||||||||||||||||||  |||| ||| | ||||||||||||||||||||||| |||||||||||    
T  14842309 tgtttgaaataatttttgttttcagtttttgaaatatacaagtcctcttttcacaatagttatcattttacatattttagtttta 14842393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 37630001 - 37630089
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||  ||| |||| ||||||||| | ||||||||||||||||||||||    
T  37630001 cctgtttgaaatagtttttgttttcagttttttaaatatataagccctcttctcgcaatagttagccttttacatgttttagttttagt 37630089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 21567707 - 21567794
Alignment:
Q  91 ctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||||| ||||||||||| |||||||  || | ||| ||| |||||||||||| ||||||||||||||||||||||    
T  21567707 ctgtttgaaatagtttttgttttcagttttagaaatatacaaatcctcttcttacaatagttatctttttacatgttttagttttagt 21567794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 22798540 - 22798613
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttaca 163  Q
    ||||||||||||||||||| |||||||||||||||||||  |||| ||| |||||||||||||||| |||||||    
T  22798540 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttaca 22798613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 36470222 - 36470137
Alignment:
Q  94 tttgaaatagtttttatttt-cagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||| ||||| |||| |||||||||||||||  ||||  || |||||||||||||||| ||||||||||||||||||||||    
T  36470222 tttgaaataatttttgtttttcagtttttgaaatatacaagtcatcttctcacaatagttatccttttacatgttttagttttagt 36470137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 4234177 - 4234261
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttt 174  Q
    ||||||| ||||||||||| |||||||||||||||||||  ||||  || |||| ||||||||| | ||||||||||||||||||    
T  4234177 cctgtttaaaatagtttttgttttcagtttttgaaatatacaagtcatcttctcgcaatagttagccttttacatgttttagttt 4234261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 39436844 - 39436928
Alignment:
Q  94 tttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||| ||||| |||||| ||||||||||||  |||| ||| |||||||||||||||  ||||| ||||||||||||||||    
T  39436844 tttgaaataatttttgttttcaatttttgaaatatacaagtcctcttctcacaatagttatttttttatatgttttagttttagt 39436928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 29958596 - 29958518
Alignment:
Q  98 aaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttta 176  Q
    ||||| ||||| |||||||||||||||||||  ||||  || | | |||||||||||| ||||||||||||||||||||    
T  29958596 aaataatttttgttttcagtttttgaaatatacaagtcatcttattacaatagttatccttttacatgttttagtttta 29958518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 23275613 - 23275532
Alignment:
Q  94 tttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttt 175  Q
    ||||||||||||||| |||||||||||||||||||  |||| ||| | | ||  |||||||  |||||||||||||||||||    
T  23275613 tttgaaatagtttttgttttcagtttttgaaatatacaagtcctctttttacggtagttattcttttacatgttttagtttt 23275532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 36046614 - 36046533
Alignment:
Q  94 tttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttta 176  Q
    ||||||||||||||| ||| |||||||||||||||  || |   | | |||||||||||||| ||||||||||||||||||||    
T  36046614 tttgaaatagtttttgttt-cagtttttgaaatatacaaatctccttttcacaatagttatccttttacatgttttagtttta 36046533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 4414226 - 4414263
Alignment:
Q  91 ctgtttgaaatagtttttattttcagtttttgaaatat 128  Q
    |||||||||||||||||| |||||||||||||||||||    
T  4414226 ctgtttgaaatagtttttgttttcagtttttgaaatat 4414263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 45310103 - 45310021
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttt 175  Q
    ||||||||||||||||| |||||| ||||||||||||  |||||||| | ||| ||| |||||   ||||||||||||| ||||    
T  45310103 tgtttgaaatagtttttgttttcaatttttgaaatatacaagttctcttttcataatggttat-tctttacatgttttattttt 45310021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 8163732 - 8163645
Alignment:
Q  91 ctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||||| ||||| |||||||||||||  |||||||| |||||||||||||||| ||||||||||||||||||||||    
T  8163732 ctgtttgaaatagtttttgttttctgtttttgaaatatacaagttctcttctcacaatagttatctttttacatgttttagttttagt 8163645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 40337155 - 40337068
Alignment:
Q  91 ctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||  || |||||||||||||||||||||||||||||||||||||||    
T  40337155 ctgtttgaaatagtttttgttttcagttttcgaaatatgcaagtcatcttctcacaatagttatcattttacatgttttagttttagt 40337068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 41326042 - 41326128
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||| |||| |||||||||||||| ||| |  || |||||||||||||||| ||||||||||||||||||||||    
T  41326042 tgtttgaaatagtttttgttttgagtttttgaaatatataaatcttcttctcacaatagttatccttttacatgttttagttttagt 41326128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 28089153 - 28089221
Alignment:
Q  110 ttttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||||||  || |  || ||| |||||||||||||||||||||||||||||||||||    
T  28089153 ttttcagtttttgaaatatacaaatcatcttcttacaatagttatcattttacatgttttagttttagt 28089221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 2362471 - 2362384
Alignment:
Q  91 ctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||| | ||||| |||||||||||| ||||||  || |  || ||||||||||||||||||||||| | |||||||||||||    
T  2362471 ctgtttgaaacaatttttgttttcagtttttaaaatatacaaatcttcttctcacaatagttatcattttacttattttagttttagt 2362384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 35589494 - 35589412
Alignment:
Q  93 gtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttt 175  Q
    |||||||||||||||| |||||  ||||||||||||  |||| ||| | ||| |||||||||| ||||| || ||||||||||    
T  35589494 gtttgaaatagtttttgttttcgatttttgaaatatacaagtcctcttttcataatagttatccttttatatattttagtttt 35589412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 36404308 - 36404224
Alignment:
Q  94 tttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||| |||||||||||||||||||  |||| ||| |||||||||||||||| ||||||||||||||||||||||    
T  36404308 tttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttagttttagt 36404224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 37115977 - 37115889
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||  || |||| ||||||||||||||||| ||||||||||||||||    
T  37115977 cctgtttgaaatagtttttgttttcagtttttgaaatatataagtcatcttctcgcaatagttatcattttatatgttttagttttagt 37115889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 46487269 - 46487356
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||  || |||||||||||||||||||||| ||||||||||||||||    
T  46487269 cctgtttgaaatagttttt-ttttcagtttttgaaatatataagtcttcttctcacaatagttatcattttatatgttttagttttagt 46487356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 35534480 - 35534571
Alignment:
Q  89 ccctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagttc 180  Q
    |||||||| ||||||||||| |||||||||||||||||||  ||||  || |||||||||||||||||||||| ||||||||||||||||||    
T  35534480 ccctgtttaaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcacaatagttatcattttatatgttttagttttagttc 35534571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 39391958 - 39392044
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||| |||||||||||||||||||  ||||| || | |||||||||||||| ||||||||||||||||||||||    
T  39391958 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttttcttttcacaatagttatccttttacatgttttagttttagt 39392044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 45602984 - 45603071
Alignment:
Q  91 ctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||||| |||||||||||||||||||  ||||  || | |||||||||||||| ||||||||||||||||||||||    
T  45602984 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttatcacaatagttatccttttacatgttttagttttagt 45603071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 29360481 - 29360569
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||| | ||||| |||||||||||||||||||  |||| ||| ||||||| |||||||| ||||||||||||||||||||||    
T  29360481 cctgtttgaaacaatttttcttttcagtttttgaaatatacaagtcctcttctcacagtagttatccttttacatgttttagttttagt 29360569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 52742351 - 52742437
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttta 176  Q
    ||||||||||||||||||| ||| |||||||||||||||  || ||||| | || |||||||||||||||||||| |||||||||||    
T  52742351 cctgtttgaaatagtttttgtttccagtttttgaaatatacaaattctcttatcgcaatagttatcattttacatattttagtttta 52742437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 14201716 - 14201798
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttt 174  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||| ||| | |||||||||||||  ||||||||||||||||||    
T  14201716 cctgtttgaaatagtttttgttttcagtttttgaaata--taagtcctcttttcacaatagttattcttttacatgttttagttt 14201798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 48944191 - 48944107
Alignment:
Q  94 tttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||| |||| || |||||||||||  |||| ||| ||| |||||||||||||||||||||||||| ||||||||    
T  48944191 tttgaaatagtttttctttttagcttttgaaatatacaagtcctcttcttacaatagttatcattttacatgtttttgttttagt 48944107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 16353566 - 16353494
Alignment:
Q  103 gtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttt 175  Q
    |||||| |||||||||||||||||||  |||| ||| | |||||||||||||| |||||||||||||||||||    
T  16353566 gtttttgttttcagtttttgaaatatacaagtcctcttttcacaatagttatccttttacatgttttagtttt 16353494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 3618415 - 3618342
Alignment:
Q  105 ttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||| |||||||||| ||||||||  ||||| || |||||||||| ||||| ||||||||||||||||||||||    
T  3618415 ttttgttttcagtttctgaaatatacaagttttcttctcacaatatttatctttttacatgttttagttttagt 3618342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 48644540 - 48644609
Alignment:
Q  110 ttttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagtt 179  Q
    |||||| ||||||||||||  || |  || |||||||||| |||||||||||||||||||||||||||||    
T  48644540 ttttcaatttttgaaatatacaaatcatcttctcacaatatttatcattttacatgttttagttttagtt 48644609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 54883062 - 54882994
Alignment:
Q  110 ttttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||| |||||||||||||  |||| ||| |||||||||| ||||| |||||| |||||||||||||||    
T  54883062 ttttcggtttttgaaatatagaagtcctcttctcacaatatttatccttttacgtgttttagttttagt 54882994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 47599413 - 47599451
Alignment:
Q  140 tctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  47599413 tctcacaatagttatccttttacatgttttagttttagt 47599451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 24909598 - 24909508
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagttc 180  Q
    |||||||||||||||||||||||||||||||| ||||||   ||||||| |||||||||||||||| |||||||| |||| ||||||||||    
T  24909598 cctgtttgaaatagtttttattttcagtttttaaaatatactagttctcttctcacaatagttatccttttacatattttcgttttagttc 24909508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 571650 - 571731
Alignment:
Q  94 tttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttt 175  Q
    ||||||||||||||| ||||||||||||||||||| || || ||| ||||| ||||||||||||||||||||||||||||||    
T  571650 tttgaaatagtttttgttttcagtttttgaaatatatacgtcctcttctcataatagttatcattttacatgttttagtttt 571731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 3695405 - 3695493
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| ||||| |||||||||||||  |||| | | | ||| |||||||||||||||||||||||||||||||||    
T  3695405 cctgtttgaaatagtttttgttttcggtttttgaaatatacaagtccccttttcataatagttatcattttacatgttttagttttagt 3695493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 11121856 - 11121944
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||  |||||||||| |||||||||||||||||||  ||||  || || ||||||||||||||||||||||||||||||||||||    
T  11121856 cctgtttataatagtttttgttttcagtttttgaaatatacaagtcatcttcgcacaatagttatcattttacatgttttagttttagt 11121944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 39001946 - 39002034
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| |||||||||||||||||||  |||| ||| | |  ||||||||||| ||||||||||||||||||||||    
T  39001946 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctctttttgcaatagttatccttttacatgttttagttttagt 39002034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 6750400 - 6750312
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| |||||||||||||||||||  || | |   | |||||||||||||| ||||||||||||||||||||||    
T  6750400 cctgtttgaaatagtttttgttttcagtttttgaaatatacaaatccctttttcacaatagttatctttttacatgttttagttttagt 6750312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 41998969 - 41998881
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||||| |||||| ||||||||||||  ||||  || |||||||||| ||||| ||||| ||||||||||||||||    
T  41998969 cctgtttgaaatagtttttgttttcattttttgaaatatacaagtcttcttctcacaatatttatctttttatatgttttagttttagt 41998881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 794914 - 794997
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttt 175  Q
    ||||||||||| ||||| |||||||||||||||||||  | ||  || |||||||||||||||| |||||||||||||||||||    
T  794914 tgtttgaaatattttttgttttcagtttttgaaatatacaggtcttcttctcacaatagttatccttttacatgttttagtttt 794997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 36290612 - 36290678
Alignment:
Q  112 ttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||||  |||| ||| ||| |||||||||||||||||||||||||||||||||||    
T  36290612 ttcagtttttgaaatatacaagtcctcttctgacaatagttatcattttacatgttttagttttagt 36290678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 26654030 - 26653945
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttt 175  Q
    ||||||||||||||||||| |||||| ||||||||||||  | || ||| ||||||||| |||||| |||||||||||||| ||||    
T  26654030 cctgtttgaaatagtttttgttttcaatttttgaaatatacaggtcctcttctcacaatggttatccttttacatgttttaatttt 26653945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 18808781 - 18808865
Alignment:
Q  94 tttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||| ||||| |||||||||| ||||||||  ||||  || |||||||||||||||| ||||| ||||||||||||||||    
T  18808781 tttgaaataatttttgttttcagtttatgaaatatacaagtcttcttctcacaatagttatccttttatatgttttagttttagt 18808865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 44272446 - 44272362
Alignment:
Q  92 tgtttgaaatagtttttattttcagttttt-gaaatatgtaagttctcatctcacaatagttatcattttacatgttttagtttt 175  Q
    ||||||||||||||||| |||||||||||| |||||||  |||||||| | ||| ||| ||||| ||||||||||||||||||||    
T  44272446 tgtttgaaatagtttttgttttcagttttttgaaatatacaagttctcttttcataatggttattattttacatgttttagtttt 44272362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 4792658 - 4792593
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatc 155  Q
    ||||||| ||||||||||| |||| ||||||||||||||  |||||||| ||||||||||||||||    
T  4792658 cctgtttaaaatagtttttgtttttagtttttgaaatatacaagttctcttctcacaatagttatc 4792593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 1585859 - 1585938
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgtttt 169  Q
    ||||||||||||||||| | |||| ||||||||||||||  ||||  || ||| |||||||||||| |||||||||||||    
T  1585859 cctgtttgaaatagtttatgtttttagtttttgaaatatacaagtcttcttcttacaatagttatccttttacatgtttt 1585938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 7409885 - 7409825
Alignment:
Q  118 ttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||   ||||||| ||||| |||||||||| ||||||||||||||||||||||    
T  7409885 ttttgaaatataatagttctcttctcataatagttatccttttacatgttttagttttagt 7409825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 9224912 - 9224877
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaata 127  Q
    ||||||||||||||||| ||||||||||||||||||    
T  9224912 tgtttgaaatagtttttgttttcagtttttgaaata 9224877  T

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Target: scaffold0140 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 21475 - 21563
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||| |  || ||||||||||||||| |||||||||||||||||||||||    
T  21475 cctgtttgaaacagtttttgttttcagtttttgaaatatataaatcatcttctcacaatagttattattttacatgttttagttttagt 21563  T

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Target: scaffold0025 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 67866 - 67960
Alignment:
Q  85 atgaccctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagtt 179  Q
    |||| ||||||||||||| ||||| |||||||||||| ||||||  |||| ||| ||| |||||||||||| |||||||||||||||||||||||    
T  67866 atgagcctgtttgaaataatttttgttttcagtttttaaaatatacaagtcctcttctaacaatagttatccttttacatgttttagttttagtt 67960  T

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Target: scaffold0302 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 18593 - 18505
Alignment:
Q  90 cctgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||||||  ||| ||||||||||||||  ||||  || |||||||||||||||| ||||||||||||||||||||||    
T  18593 cctgtttgaaatagtttttggttttagtttttgaaatatacaagtcatcttctcacaatagttatccttttacatgttttagttttagt 18505  T

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Target: scaffold0121 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 37489 - 37405
Alignment:
Q  94 tttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||| ||| ||||| |||||||||||||  |||| ||| |||| |||||||||||||||||||| |||||||||||||    
T  37489 tttgaaatagtgtttgttttcggtttttgaaatatacaagtcctcttctcgcaatagttatcattttacatattttagttttagt 37405  T

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Target: scaffold0532 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 11320 - 11406
Alignment:
Q  92 tgtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    ||||||||||||||||| |||||||||||||||||||  |||| ||| ||||| | |||||||| ||| ||||||||| ||||||||    
T  11320 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcagagtagttatcctttaacatgtttttgttttagt 11406  T

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Target: scaffold1248 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 970 - 1055
Alignment:
Q  93 gtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||| |||||||||||| ||||||  ||||  |  ||||  |||||||||  ||||| ||||||||||||||||    
T  970 gtttgaaatagtttttgttttcagtttttaaaatatacaagtctttttctcgtaatagttattcttttatatgttttagttttagt 1055  T

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Target: scaffold0952 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 1343 - 1258
Alignment:
Q  93 gtttgaaatagtttttattttcagtttttgaaatatgtaagttctcatctcacaatagttatcattttacatgttttagttttagt 178  Q
    |||||||||||||||| |||||||||||| ||||||  ||||  |  ||||  |||||||||  ||||| ||||||||||||||||    
T  1343 gtttgaaatagtttttgttttcagtttttaaaatatacaagtctttttctcgtaatagttattcttttatatgttttagttttagt 1258  T

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