View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10084_low_5 (Length: 408)
Name: NF10084_low_5
Description: NF10084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10084_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 220 - 393
Target Start/End: Complemental strand, 39090330 - 39090156
Alignment:
| Q |
220 |
cacaataccttccattgttgtgaagaatttggaatttcaatcctgttttgagattttggggtcaaaaaaggtgaaatttttgttcagtgaattatgaaaa |
319 |
Q |
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| T |
39090330 |
cacaataccttccattgttgtgaagaatttggaattccgatcctgttttgagattttggggtcaaaaaaggtgaaatttttgttcagtgaattatgaaaa |
39090231 |
T |
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| Q |
320 |
aagagagacccatttaacataaaagagaatg-aatgtaaaagagaaaagggttttcaatttgacccttgaaattg |
393 |
Q |
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| T |
39090230 |
aagagagacccatttaacggaaaagagaatgtaacgtaaaagagaaaagggttttcaatttgacccttgaaattg |
39090156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 39090550 - 39090401
Alignment:
| Q |
6 |
atacccttaagtttgactcactttctcataacccaaagaccccaaatttaactcctttatgccaaatccaccattgcaacaatctacccagtaatgcaaa |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39090550 |
atacccttaagtttgactcactttctcataacccaaagaccccaaatttaaatcctttatgtcaaatccaccattgcaacaatctacccagtaatgcaaa |
39090451 |
T |
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| Q |
106 |
caatccctatcgtagattctaacc------tgattcaatttcaatacatg |
149 |
Q |
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| T |
39090450 |
caatctctagtgtagattctaacctaacattgattcaatttcaatacatg |
39090401 |
T |
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