View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10084_low_6 (Length: 401)

Name: NF10084_low_6
Description: NF10084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10084_low_6
NF10084_low_6
[»] chr6 (8 HSPs)
chr6 (13-401)||(31289781-31290147)
chr6 (61-277)||(27421059-27421275)
chr6 (47-229)||(26652118-26652300)
chr6 (47-229)||(26758086-26758268)
chr6 (104-254)||(26632715-26632865)
chr6 (104-254)||(26738691-26738841)
chr6 (316-399)||(27420978-27421061)
chr6 (165-381)||(31394770-31394987)
[»] scaffold0003 (2 HSPs)
scaffold0003 (61-277)||(66088-66304)
scaffold0003 (316-399)||(66302-66385)


Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 31289781 - 31290147
Alignment:
Q  13 gcagagatatggctcacatcagtgccnnnnnnngaatgtgtttagtatgagacttttacgagatagacttcctaaccagctcgattgtgaggattcccta 112  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31289781 gcagagatatggctcacatcagtgccaaaaaaagaatgtgtttagtatgagacttttacgagatagacttcctaaccggctcgattgtgaggattcccta 31289880  T
Q  113 tggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgacct 212  Q
    |||||          ||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31289881 tggac----------gcgatc------------gatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgacct 31289958  T
Q  213 tcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcggtgatgagtgctgatttcgttccctggcggcgatttccggcaattgctgtca 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31289959 tcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcggtgatgagtgctgatttcgttccctggcggcgatttccggaaattgctgtca 31290058  T
Q  313 cactttttctcctctgttgctaccaatggatagaggaaattttggggtgttcagcttcttgtctctggcgttggatttgagtgacatta 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290059 cactttttctcctctgttgctaccaatggatagaggaaattttggggtgttcagcttcttgtctctggcgttggatttgagtgacatta 31290147  T

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Target: chr6; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 61 - 277
Target Start/End: Complemental strand, 27421275 - 27421059
Alignment:
Q  61 gagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatg 160  Q
    |||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  27421275 gagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttgacacgatccctcaaactttcaatcccggtcaaatg 27421176  T
Q  161 tttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcg 260  Q
    ||  |  |||  ||||||||| || |||  |||||||||||||||||||||||||||||||||||||||  |||||||||| | || ||| |||||  ||    
T  27421175 ttcacctttctgctcactgacacaatggcagaaacatcacaacacccgaccttcagcttcaatatccctggtttctgcatcatcatattttatcccagcg 27421076  T
Q  261 gtgatgagtgctgattt 277  Q
    |||||||||||||||||    
T  27421075 gtgatgagtgctgattt 27421059  T

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Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 47 - 229
Target Start/End: Original strand, 26652118 - 26652300
Alignment:
Q  47 aatgtgtttagtatgagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcgatccctcaaactttcg 146  Q
    ||||||||| || || |||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |    
T  26652118 aatgtgtttggtttgggactcttacaagatagacttcataaccggctcgattgtgaggattccctatggacattccttgatgtgatccctcaaacttttg 26652217  T
Q  147 atcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccct 229  Q
    ||| | |||||||||| |||||||| |||| ||||||| |||  ||||||||||| |||||||||||||||||||||||||||    
T  26652218 atctcagtcaaatgttcgcagttccgctcaatgacgcattggcagaaacatcacatcacccgaccttcagcttcaatatccct 26652300  T

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Target: chr6; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 47 - 229
Target Start/End: Original strand, 26758086 - 26758268
Alignment:
Q  47 aatgtgtttagtatgagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcgatccctcaaactttcg 146  Q
    ||||||||| || || |||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |    
T  26758086 aatgtgtttggtttgggactcttacaagatagacttcataaccggctcgattgtgaggattccctatggacattccttgatgtgatccctcaaacttttg 26758185  T
Q  147 atcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccct 229  Q
    ||| | |||||||||| |||||||| |||| ||||||| |||  ||||||||||| |||||||||||||||||||||||||||    
T  26758186 atctcagtcaaatgttcgcagttccgctcaatgacgcattggcagaaacatcacatcacccgaccttcagcttcaatatccct 26758268  T

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Target: chr6; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 104 - 254
Target Start/End: Original strand, 26632715 - 26632865
Alignment:
Q  104 gattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaac 203  Q
    |||| ||||||||||||||||||| | |||||| |||| ||  ||||||||||||| || | ||||||  ||||||| ||||||||||||||||||||||    
T  26632715 gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaac 26632814  T
Q  204 acccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatc 254  Q
    |||||||||||||||||| |||||||  | |||||||| ||||||||||||    
T  26632815 acccgaccttcagcttcagtatccctggtatctgcatcctaatctttgatc 26632865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 104 - 254
Target Start/End: Original strand, 26738691 - 26738841
Alignment:
Q  104 gattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaac 203  Q
    |||| ||||||||||||||||||| | |||||| |||| ||  ||||||||||||| || | ||||||  ||||||| ||||||||||||||||||||||    
T  26738691 gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaac 26738790  T
Q  204 acccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatc 254  Q
    |||||||||||||||||| |||||||  | |||||||| ||||||||||||    
T  26738791 acccgaccttcagcttcagtatccctggtatctgcatcctaatctttgatc 26738841  T

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Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 316 - 399
Target Start/End: Complemental strand, 27421061 - 27420978
Alignment:
Q  316 tttttctcctctgttgctaccaatggatagaggaaattttggggtgttcagcttcttgtctctggcgttggatttgagtgacat 399  Q
    |||||||||||||| ||||||||  ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  27421061 tttttctcctctgtggctaccaactgatagagaaaattttagggttttcagcttcttgtctctggcgttggatttgagtgacat 27420978  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 381
Target Start/End: Original strand, 31394770 - 31394987
Alignment:
Q  165 cagttccactcactgacgcagtggtgg-aaacatcacaacacccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcggtg 263  Q
    ||||||| | ||||| ||||||||||| |||| |||||||||| |||||||||||||||||| | |  ||| |||||| | |||||| ||||   ||||     
T  31394770 cagttccccgcactgtcgcagtggtggtaaacgtcacaacacctgaccttcagcttcaatatacatggtttttgcatcatcatctttaatccatgcggtt 31394869  T
Q  264 atgagtgctgatttcgttccctggcggcgatttccggcaattgctgtcacactttttctcctctgttgctaccaatggatagaggaaattttggggtgtt 363  Q
    ||||  || |||||||||    |||||| ||||| |   ||| |||||||| |||||||||||| |||||  || ||||||||| |||  ||||||| |     
T  31394870 atgaacgcagatttcgttattgggcggcaatttctgatcatttctgtcacagtttttctcctctattgctggcattggatagagcaaaacttggggtttg 31394969  T
Q  364 cagcttcttgtctctggc 381  Q
     | |||||||||||||||    
T  31394970 aatcttcttgtctctggc 31394987  T

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Target: scaffold0003 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 61 - 277
Target Start/End: Original strand, 66088 - 66304
Alignment:
Q  61 gagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatg 160  Q
    |||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  66088 gagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttgacacgatccctcaaactttcaatcccggtcaaatg 66187  T
Q  161 tttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcg 260  Q
    ||  |  |||  ||||||||| || |||  |||||||||||||||||||||||||||||||||||||||  |||||||||| | || ||| |||||  ||    
T  66188 ttcacctttctgctcactgacacaatggcagaaacatcacaacacccgaccttcagcttcaatatccctggtttctgcatcatcatattttatcccagcg 66287  T
Q  261 gtgatgagtgctgattt 277  Q
    |||||||||||||||||    
T  66288 gtgatgagtgctgattt 66304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 316 - 399
Target Start/End: Original strand, 66302 - 66385
Alignment:
Q  316 tttttctcctctgttgctaccaatggatagaggaaattttggggtgttcagcttcttgtctctggcgttggatttgagtgacat 399  Q
    |||||||||||||| ||||||||  ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  66302 tttttctcctctgtggctaccaactgatagagaaaattttagggttttcagcttcttgtctctggcgttggatttgagtgacat 66385  T

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