View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10084_low_7 (Length: 396)
Name: NF10084_low_7
Description: NF10084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10084_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3263217 - 3262996
Alignment:
| Q |
1 |
ataggaagtaattacccaccactttgaagtccatgaatccatggtaagtagcaaggtcagtgatactgaggcaaccacaatttgatggtgtccctaatat |
100 |
Q |
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| T |
3263217 |
ataggatgtaattacccaccactttgaagtccatgaatccatggtaagtagcaaggtcagtgatactgaggcaaccacaatttgatggtgtccctaatat |
3263118 |
T |
|
| Q |
101 |
agcagcgcttccattgtgacgaatccattcttcaatcaaatccacacatagctacaacaaacaagaacagtcacaaatgcaattgtagcttcgaaaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3263117 |
agcagcgcttccattgtgacgaatccattcttcaatcaaatccacacatagctacaacaaacaagaacagtcacaaatgcaattgtagcttcgaaaataa |
3263018 |
T |
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| Q |
201 |
cataagagaagccataaaacac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
3263017 |
cataagagaagccataaaacac |
3262996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 218 - 378
Target Start/End: Complemental strand, 3262966 - 3262806
Alignment:
| Q |
218 |
aacacgtggacacagatggaaattgaatataatcacaaggactcagacacatgtcgaacaccggaattgccaatagagaagagaaaaggaataactcact |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3262966 |
aacacgtggacacagatggaaattgaatataatcacaaggactcagacacatgtcgaacaccggaattgccaatagagaagagaaaaggaacaactcacg |
3262867 |
T |
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| Q |
318 |
gtgttttgggctaaaccaagctgaataacaccatcaggattatgaatccgatgataaggat |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3262866 |
gtgttttgggctaaaccaagctgaataacaccatcaggattatgaatccgatgataaggat |
3262806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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