View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10084_low_8 (Length: 392)
Name: NF10084_low_8
Description: NF10084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10084_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 391
Target Start/End: Complemental strand, 4537729 - 4537351
Alignment:
| Q |
14 |
gcataggatgggaagtacccgagtttatagattttggtgattgagtaaaagaaatttagtgtttattggacgaatatttgttaatcgtaattttgtaaac |
113 |
Q |
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| T |
4537729 |
gcataggatgggaagtacctgagttgatagattttggtgattgagtaaaagaaatttagtgtttattggacgaatatttgttaatcgtaattttgtaaac |
4537630 |
T |
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| Q |
114 |
tctgttttgtaaaattgatagttaaagttgagtttgagaatgaaatgaatttatgtatgaatgtttt-agtcatataacaagtttgatatataacatagc |
212 |
Q |
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| T |
4537629 |
tctgttttgtaaaattgatagttaaagttgagtttgagaatgaaatgaatttatgtatgaatgtttgcagtcatataacaagtttgatttataacataac |
4537530 |
T |
|
| Q |
213 |
gtaatttcttgaatccatatcaaaattacttataatttaataaaatcgagattaaaagttataataaattttggttcttaataatcaaacaattagaatt |
312 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
4537529 |
gtaatttcttgaatccatatcaaaataacttataatttaataaaatcgagattaaaagttataataaattttgattcttaataatcaaacatttagaatt |
4537430 |
T |
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| Q |
313 |
atttcaaaggtaacaactacttgagtcttaaaggaagggattgtctagccatactaaaatcatgattaatataagcaaa |
391 |
Q |
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| T |
4537429 |
atttcaaaggtaacaactacttgagtcttaaagaaagggattgtctagccatactaaaatcatgattaatataagcaaa |
4537351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 33648724 - 33648774
Alignment:
| Q |
82 |
gacgaatatttgttaatcgtaattttgtaaactctgttttgtaaaattgat |
132 |
Q |
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| T |
33648724 |
gacgaacatttgttaatcgtgattttgtaaattctgttttgtaaaattgat |
33648774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 391
Target Start/End: Complemental strand, 52084255 - 52084170
Alignment:
| Q |
305 |
ttagaattatttcaaaggtaacaactacttgagtcttaaaggaagggattgtctagccatactaaaatcatgattaatataagcaaa |
391 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||| |||||||||| |
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| T |
52084255 |
ttagaattatttcaaaggtaacaatgacttgagtcttaaa-gaaaggattgtctagccatgctaaaatcatgattcgtataagcaaa |
52084170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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