View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10084_low_9 (Length: 349)
Name: NF10084_low_9
Description: NF10084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10084_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 4536695 - 4536859
Alignment:
| Q |
18 |
agattaagatatgttaccccaattgaattgccctcacttatgcataggcattattgtgtgatctcttgcaaacatacggtcacaactcactactcatgtg |
117 |
Q |
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| T |
4536695 |
agattaagatatgttaccccaattgaattgccctcacttatccataggcattattgtgtgatctcttgcaaacatacggtcacaactcactactcatgta |
4536794 |
T |
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| Q |
118 |
ctagaaaaaagtaggagtaacaaatcta------catttaagccttagatttggaaatattacaa |
176 |
Q |
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| T |
4536795 |
ctagaaaaaaataggagtaacaaatgtacaaaatcatttaagccttagatttggaaatattacaa |
4536859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 182 - 313
Target Start/End: Original strand, 4537186 - 4537317
Alignment:
| Q |
182 |
tatcacatgttttggtataggcagggtcaccaaggcaatgtaagacttaaaagtaacaaatcatgaagtggcaatttgttaagtaccaaaagatgagatt |
281 |
Q |
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| T |
4537186 |
tatcacatgttttggtatgggtagggtcaccaaggcaatgtaagacttaaaagtaacaaatcatgaagtggcaatttgttaagtaccaaaagatgagatt |
4537285 |
T |
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| Q |
282 |
gtaaataagggactgtccttacttttggacga |
313 |
Q |
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| T |
4537286 |
gtaaataagggattgtccttacttttggacga |
4537317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 52084050 - 52084139
Alignment:
| Q |
228 |
ttaaaagtaacaaatcatgaagtggcaatttgttaagtaccaaaagatgagattgtaaataaggga----ctgtccttacttttggacga |
313 |
Q |
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| T |
52084050 |
ttaagagtaacaaatcatgaagaggcaatttgttatgtaccaaaagatgagattgtaaataagggattgtctgaccttacttttggacga |
52084139 |
T |
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