View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10085_high_11 (Length: 250)
Name: NF10085_high_11
Description: NF10085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10085_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 24563798 - 24563559
Alignment:
| Q |
1 |
cattgttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563798 |
cattgttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgct |
24563699 |
T |
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| Q |
101 |
caactaaagataatgagttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatgaaccttcttggaattggttcggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24563698 |
caactaaagataatgagttgatcgtggtatggctactaagggcttttccaatacatttgctctgattcaagttatgaaccttcttggaattggttcggat |
24563599 |
T |
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| Q |
201 |
cacactgttatctcaaaagctttggaagatatctcctatg |
240 |
Q |
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| T |
24563598 |
cacactgttatctcaaaagctttggaagatatctcctatg |
24563559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 9798706 - 9798586
Alignment:
| Q |
1 |
cattgttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgct |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| || | ||| |||||||||||||||||||||||| |
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| T |
9798706 |
cattgttgatttggtttcttaattacggatgtagttcgagatttttaatgatacactattattagagcagacaaatggagggaatccaagaagatatgct |
9798607 |
T |
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| Q |
101 |
caactaaagataatgagttga |
121 |
Q |
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| T |
9798606 |
caactaaagataaggagttga |
9798586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 44337525 - 44337428
Alignment:
| Q |
118 |
ttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatgaaccttcttggaattggttcggatcacactgttatctca |
215 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||||||||| | |||||||||||||||||| ||||||| |
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| T |
44337525 |
ttgatcgtggtatggctactaagggcttttccaatacatttgctctgattcaagttacgcaccttcttgaatttggttcggatcacactgctatctca |
44337428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 45535959 - 45536060
Alignment:
| Q |
3 |
ttgttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctca |
102 |
Q |
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||||||||||||||||| |||||||||||||| | || ||||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||||||| |
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| T |
45535959 |
ttgttggtttggtttctgaattacggatgtaggtcgaaatttttaatgatacactattattagaatagaaaaagggaggaaatccaagaagatatgctca |
45536058 |
T |
|
| Q |
103 |
ac |
104 |
Q |
| |
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|| |
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| T |
45536059 |
ac |
45536060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 45536177 - 45536235
Alignment:
| Q |
118 |
ttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatg |
176 |
Q |
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||||||||||||| ||| | |||||||||||||||||||||||||||||||||| |||| |
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| T |
45536177 |
ttgatcgtggtatagctaccaagggcttttccaatacatttgctctgattcaagttatg |
45536235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 44337696 - 44337629
Alignment:
| Q |
44 |
tttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaactaaagata |
112 |
Q |
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|||||||||||||||||| ||||||| ||||| ||||||||||||||| |||| |||||| |||||| |
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| T |
44337696 |
tttaatgatacactattattagaaca-gaaaagtgagggaatccaagaaactatgttcaactgaagata |
44337629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 19190201 - 19190303
Alignment:
| Q |
2 |
attgttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctc |
101 |
Q |
| |
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||||||||||| |||||| ||||| | ||||| || || | |||||||||| ||||||| ||||||| |||||| |||||||||||||||| ||||||| |
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| T |
19190201 |
attgttggtttagtttctgaattatgaatgtatttcgaaaattttaatgatgtactattattagaacagaaaaagtgagggaatccaagaagctatgctc |
19190300 |
T |
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| Q |
102 |
aac |
104 |
Q |
| |
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||| |
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|
| T |
19190301 |
aac |
19190303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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