View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10085_high_13 (Length: 243)
Name: NF10085_high_13
Description: NF10085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10085_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 27 - 226
Target Start/End: Original strand, 24564070 - 24564269
Alignment:
| Q |
27 |
taaaggaagtaagatgtatctcaccatcatttatgtgtgatcaccgttaaaaatcattttcaccatcttccaatcgctctattgcaaagcaagaaaccaa |
126 |
Q |
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| T |
24564070 |
taaaggaagtaagatgtatctcatcatcatttatgtgtgatcaccgttaaaaatcattttcatcatcttccaatcgctctattgcaaagcaagaaaccaa |
24564169 |
T |
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| Q |
127 |
agagaaggcaatatatgaacatgaagtggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagtaaattacttcaacgtgact |
226 |
Q |
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| T |
24564170 |
agagaaggcaatatatgaacatgaagtggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagtaaattacttcaacgtgact |
24564269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 9798992 - 9799181
Alignment:
| Q |
40 |
atgtatctcaccatcatttatgtgtgatcaccgttaaaaatcattttcaccatcttccaatcgctc-tattgcaaagcaagaaaccaaagagaaggcaat |
138 |
Q |
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| T |
9798992 |
atgtatcttaccatcatttatgtgtgattaccgttaaagatccttttcaccatcttccggtcgctcatattgcaaagcaagataccaaagagaaagcaac |
9799091 |
T |
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| Q |
139 |
atatgaacatgaag--tggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagtaaattacttcaacgtgact |
226 |
Q |
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| T |
9799092 |
atatgaacatgaagccgggggtaaaatgtagctactggatgaaagaaagatttatttctgaaagcaacagtaaattaaatcaacgtgact |
9799181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 45535313 - 45535196
Alignment:
| Q |
109 |
tgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagtggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagta |
208 |
Q |
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| T |
45535313 |
tgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagcggggtaaaatgtagctaatggataaaagaaagttttaattctgaaagtaatagtt |
45535214 |
T |
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| Q |
209 |
aattacttcaacgtgact |
226 |
Q |
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| T |
45535213 |
aattaaatcaatgtgact |
45535196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 44338195 - 44338311
Alignment:
| Q |
108 |
ttgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagtggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagt |
207 |
Q |
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| T |
44338195 |
ttgcaaagcaagaaatcaaagagaaggcaatat--gaacatgaagtagggtaaaaagtaggtaattgataaaataaagttttatttctgaaagcaataat |
44338292 |
T |
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| Q |
208 |
aaattacttcaacgtgact |
226 |
Q |
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| T |
44338293 |
aaattaaatcaacgtgact |
44338311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 45535665 - 45535593
Alignment:
| Q |
31 |
ggaagtaagatgtatctcaccatcatttatgtgtgatcaccgttaaaaatcattttcaccatcttccaatcgct |
104 |
Q |
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| T |
45535665 |
ggaagtaagacgtatctcaccatcatttatgtgtgttcac-gttaaaaatcattttcaccatcttccaatcgct |
45535593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 44337903 - 44337971
Alignment:
| Q |
38 |
agatgtatctcaccatcatttatgtgtgatcaccgttaaaaatcattttcaccatcttccaatcgctct |
106 |
Q |
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| T |
44337903 |
agatgtatctcaccataatttatgtatgatcatcgttagaaatcattttcaccatcttccaattgctct |
44337971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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