View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10085_high_15 (Length: 240)
Name: NF10085_high_15
Description: NF10085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10085_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 15427810 - 15427587
Alignment:
| Q |
1 |
ctccacttgaattataggccttgccttatgttttctttttgttatgctcgattccaactaagatggttagaaatgtattgtggtatggtagtataaacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15427810 |
ctccacttgaattataggccttgccttatgttttctttttgttatgctcgattccaactaagatggttagaaatgtattgt-gtatggtagtataaacca |
15427712 |
T |
|
| Q |
101 |
agaagattaacaaataaagattggggtatggttgaaaaagtt--gtgtcaagtcaacaatggtcccaccactaacaaaacatttcactgtaagatatgaa |
198 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15427711 |
agaagattaac-aataaagattggtgtatggttgaaaaagtttagcgtcaagtcaacaatggtcccaccactaacaaaacacttcactgtaagatatgaa |
15427613 |
T |
|
| Q |
199 |
gctatctgacatctaacatcaatact |
224 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
15427612 |
gctatctgacatctaacatcaatact |
15427587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University