View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10085_high_2 (Length: 456)
Name: NF10085_high_2
Description: NF10085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10085_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 35825164 - 35825615
Alignment:
| Q |
1 |
tcgagtttggagttaaaacttgtggagacccaatgaggatgaaattacaaattgaagcttttagtttttacggtgaaaactacattagaacgcgaaaata |
100 |
Q |
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|||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
35825164 |
tcgattttgcagttaaaacttgtggagaccacgtgaggatgaaattacaaattgaagcttttagtttttacgatgaaaactacattagaacgcaaaaata |
35825263 |
T |
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| Q |
101 |
gaccggccaccg--------------tgcttagttgatagattacttttggaataggtccccagaaatttgtgtccccagactcactaaacttgaacacc |
186 |
Q |
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| T |
35825264 |
gaccggccaccgcggctgcaaacacatgcttagttgatagattacttttagaataggtccccagaaatttgtgtcccctgactcactaaacttgaacacc |
35825363 |
T |
|
| Q |
187 |
aagagccttacggtaggggccaacccggcaaacactctctaaaaccaaaattaaattcatactgttttcaaaatctgacaacagtgacttcagcttaagt |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35825364 |
aagagccttacggtaggggccaacccggcaaacactctctaaaaccaaaattaaattcatactgttttcaaaatctgacaacagtgacttcagcttaagt |
35825463 |
T |
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| Q |
287 |
acatagtcatcttcatgggacctcaaaccctccaggtcaattggtactccatgatcatgaacccagtccgtgcaatgtgggtccactgttctttacacat |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35825464 |
acatagtcatcttcatgggacctcaaaccctccaggtcaattggtactccatgatcatgaacccagtccgtgcaatgtgggtccactattctttacacat |
35825563 |
T |
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| Q |
387 |
aacaannnnnnnnnnncacacattaaaaatacacagtgtgaacctctaaaag |
438 |
Q |
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||||| | |||||||||||| ||||||||||||||||||||| |
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| T |
35825564 |
aacaatatttttttttcgcacattaaaaatgcacagtgtgaacctctaaaag |
35825615 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 42544396 - 42544344
Alignment:
| Q |
46 |
tacaaattgaagcttttagtttttacggtgaaaactacattagaacgcgaaaa |
98 |
Q |
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||||||||||||||| ||||||| |||||||||||| |||| ||||| ||||| |
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| T |
42544396 |
tacaaattgaagcttctagttttcacggtgaaaactgcattggaacgtgaaaa |
42544344 |
T |
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