View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10085_high_6 (Length: 300)

Name: NF10085_high_6
Description: NF10085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10085_high_6
NF10085_high_6
[»] chr2 (4 HSPs)
chr2 (1-300)||(42213593-42213892)
chr2 (1-288)||(42206772-42207062)
chr2 (1-81)||(42214214-42214294)
chr2 (1-81)||(42214013-42214093)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 42213892 - 42213593
Alignment:
Q  1 aagggttctcagatgtcattgaatctgagagccatccattgtcttcctcgtcaagatttagcaaagagtgccagtaacttgttccgtcaaaatctgaaat 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  42213892 aagggttctcagatatcattgaatctgagagccatccattgtcttcctcgtcaagacttagcaaagagtgcccgtaacttgttccgtcaaaatctgaaat 42213793  T
Q  101 ctcagagaaagcgtcgtaataggtggatgaacaagtactgtggggagaccctaagccgtcagagtagctaagtgcatcatctacagaagttgcatcattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42213792 ctcagagaaagcgtcgtaataggtggatgaacaagtactgtggggagaccctaagccgtcagagtagctaagtgcatcatctacagaagttgcatcattg 42213693  T
Q  201 atattatctgttctttcatttggaatgcttctgttagctaaagaagcattctcttcaggtttaactctgcagccactgaaaaagttgacttttttgctca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42213692 atattatctgttctttcatttggaatgcttctgttagctaaagaagcattctcttcaggtttaactctgcagccactgaaaaagttgacttttttgctca 42213593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 42207062 - 42206772
Alignment:
Q  1 aagggttctcagatgtcattgaatctg---agagccatccattgtcttcctcgtcaagatttagcaaagagtgccagtaacttgttccgtcaaaatctga 97  Q
    |||| ||||||| ||||||||||||||   ||| |||  || |||||||||| |||||| ||||||||||||||| |||||| ||||  |||||||||||    
T  42207062 aaggattctcaggtgtcattgaatctgctgagacccaatcaatgtcttcctcttcaagacttagcaaagagtgccggtaactagttctatcaaaatctga 42206963  T
Q  98 aatctcagagaaagcgtcgtaataggtggatgaacaagtactgtggggagaccctaagccgtcagagtagctaagtgcatcatctacagaagttgcatca 197  Q
    |||||| |||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||    
T  42206962 aatctcggagaaaacgtcataataggtggatgaacaagtactatggggagaccctgagccctcagagtagctaagtgcatcatctacagcagttgcatca 42206863  T
Q  198 ttgatattatctgttctttcatttggaatgcttctgttagctaaagaagcattctcttcaggtttaactctgcagccactgaaaaagttga 288  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||| |||||||||||  ||| ||||||| ||  |||||||| ||||    
T  42206862 ttgatattatctcttctttcatttggaatgcttttgttatgtaaagaaacattctcttcatattttactctgctgctgctgaaaaaattga 42206772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 42214294 - 42214214
Alignment:
Q  1 aagggttctcagatgtcattgaatctgagagccatccattgtcttcctcgtcaagatttagcaaagagtgccagtaacttg 81  Q
    |||||| ||||||  |||||||||||||||||||| ||  ||||||||| |||||| |||| ||||| ||| |||||||||    
T  42214294 aagggtcctcagagatcattgaatctgagagccatgcagagtcttcctcttcaagacttagtaaagaatgcgagtaacttg 42214214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 42214093 - 42214013
Alignment:
Q  1 aagggttctcagatgtcattgaatctgagagccatccattgtcttcctcgtcaagatttagcaaagagtgccagtaacttg 81  Q
    |||| |||||||||  |||||||||||| |||||| ||  ||||||||| |||||| |||| ||||| ||| |||||||||    
T  42214093 aaggattctcagataccattgaatctgaaagccattcagagtcttcctcttcaagacttagtaaagaatgcgagtaacttg 42214013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University