View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10085_low_1 (Length: 480)
Name: NF10085_low_1
Description: NF10085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10085_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 463
Target Start/End: Original strand, 27573605 - 27574055
Alignment:
| Q |
16 |
cacatacatggaagcatcgtaaggcatcgcatcgcacacgaaatggactcagagaatccggtccacactcattaaataattcaattcaatgcttagacnn |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27573605 |
cacatacatggaagcatcgtaaggcatcgcatcgcacacgaaatggactcagagaatccggtccacactcattaaataattcaattcaatgcttagactt |
27573704 |
T |
|
| Q |
116 |
nnnnnn---ggtagcgttttcaatgcttagacttaacataagcatcgacgtcaatnnnnnnnnnnnnnnnnnnnnnnccctgaatcctataaattggatt |
212 |
Q |
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| T |
27573705 |
ttttattttggtagcgttttcaatgcttagacttaacataagcatcgacgtcaataaaaagaaaaacaaaataaaaaccctgaatcctataaattggatt |
27573804 |
T |
|
| Q |
213 |
caattcattgcctccacaattttgaaaccctctttgtaagcaccgtccataattcctattttatttaattgaagaagagtgatggaaaacgaagagaagg |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27573805 |
caattcattgcctccacaattttgaaaccctctttgtaagcaccgtccataattcctattttatttaatagaagaagagtgatggaaaacgaagagaagg |
27573904 |
T |
|
| Q |
313 |
gaagaaaaccaagaattttgtgtcttcatggatttcgaacaagtggagagatcatgaaaaaacagatacataagtggccacaaaatgttctagacaaact |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27573905 |
gaagaaaaccaagaattttgtgtcttcatggatttcgaacaagtggagagatcatgaaaaaacagatacataagtggccacaaaatgttcttgacaaact |
27574004 |
T |
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| Q |
413 |
cgatcttgtttttgtcgatgctccttttccttgtaatggcaaatctgatgt |
463 |
Q |
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| T |
27574005 |
cgatcttgtttttgtcgatgctccttttccttgtaatggcaaatctgatgt |
27574055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 275 - 463
Target Start/End: Original strand, 13118625 - 13118813
Alignment:
| Q |
275 |
atttaattgaagaagagtgatggaaaacgaagagaagggaagaaaaccaagaattttgtgtcttcatggatttcgaacaagtggagagatcatgaaaaaa |
374 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13118625 |
atttaattgaagaagagagatggaaaacgaagagaaggtaagaaaaccaaaaattttgtgtcttcatgggtttcgaacaagtggagagatcatgaaaaaa |
13118724 |
T |
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| Q |
375 |
cagatacataagtggccacaaaatgttctagacaaactcgatcttgtttttgtcgatgctccttttccttgtaatggcaaatctgatgt |
463 |
Q |
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| T |
13118725 |
cagatacataagtggccacaaaatgttctagacaaactagatcttgtttttgtcgaagctccttttccatgcaatgacaaatctgatgt |
13118813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 13118373 - 13118417
Alignment:
| Q |
237 |
aaaccctctttgtaagcaccgtccataattcctattttatttaat |
281 |
Q |
| |
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| T |
13118373 |
aaaccctctttgtaagcaccgcccataatttctaattaatttaat |
13118417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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