View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10085_low_13 (Length: 249)
Name: NF10085_low_13
Description: NF10085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10085_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 49 - 244
Target Start/End: Original strand, 33219945 - 33220134
Alignment:
| Q |
49 |
gagcctaccattttctcgattcgcttccatatgctcataataacgcttcactttccccacctttaaaatcaaccttccatcttcaccatattccttctta |
148 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33219945 |
gagcctaccattttctctattcgcttccatatgctcataataacgcttcactttccccacctttaaaatcaaccttccatcttcaccatattccttctta |
33220044 |
T |
|
| Q |
149 |
aaacacgaaggcatnnnnnnnnnnnnnnnnnnnnnggtttctctcaacaacgttatcgccggtggaaaaaccttcttctctctctgcttctccact |
244 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |
|
|
| T |
33220045 |
aaacacgaagacat------tcctcctcctcctccggtttctctcaacaacgttatcgccgctggaaaaaccttcttctctctcttcttcttcact |
33220134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University