View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10085_low_15 (Length: 240)
Name: NF10085_low_15
Description: NF10085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10085_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1801429 - 1801653
Alignment:
| Q |
1 |
agttctacagtggaatcggcggcatggtattattaattattcatcttatcatttcaatttctaaattcaataattgataatatttgtgnnnnnnnnnnna |
100 |
Q |
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| T |
1801429 |
agttctacagtggaatcggcggcatggtattattaattattcatcttatcatttcaatttctaaattcaataattgataatatttgtgtttttattttta |
1801528 |
T |
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| Q |
101 |
tg---atgattattcagagatactctttgatgaaagcacaagtaaacgcggaagtaattgaagcatttgaaattaataacattgctaatgatgtttatca |
197 |
Q |
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| T |
1801529 |
tttttatgatgattcagagatactctttgatgaaagcacaagtaaacgcggaagtaattgaagcatttgaaattaataacattgctaatgatgtttatca |
1801628 |
T |
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| Q |
198 |
acacaacttttctcatcgtccttac |
222 |
Q |
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||||||||||||||||||||||||| |
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| T |
1801629 |
acacaacttttctcatcgtccttac |
1801653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 9850404 - 9850292
Alignment:
| Q |
109 |
attcagagatactctttgatgaaagcacaagtaaacgcggaagtaattgaagcatttgaaattaataacattgctaatgatgtttatcaacacaactttt |
208 |
Q |
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| T |
9850404 |
attcagagatactcgtttatgaaagcacaattaatcgcggaagtaattgaagcatttgaaatcaataacattgctaatgatgtttatcaacataactttt |
9850305 |
T |
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| Q |
209 |
ctcatcgtcctta |
221 |
Q |
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| T |
9850304 |
ctcatcgccctta |
9850292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 54822805 - 54822692
Alignment:
| Q |
109 |
attcagagatactctttgatgaaagcacaagtaaacgcggaagtaattgaagcatttgaaattaa-taacattgctaatgatgtttatcaacacaacttt |
207 |
Q |
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|||||||||||||| || |||||||||||| ||| |||| |||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||| |
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| T |
54822805 |
attcagagatactcatttatgaaagcacaattaatcgcgaaagtaattgaagcatttgaaatcaaataacattgctaatgatgtttatcaacataacttt |
54822706 |
T |
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| Q |
208 |
tctcatcgtcctta |
221 |
Q |
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|||||||| ||||| |
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| T |
54822705 |
tctcatcgccctta |
54822692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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