View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10085_low_17 (Length: 227)
Name: NF10085_low_17
Description: NF10085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10085_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 52974 - 53054
Alignment:
| Q |
1 |
tgcaccaattgtaaagaatgatccatatctttatggtccaatttatcataatgtttccatgttcaagaggtattactcaaa |
81 |
Q |
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| T |
52974 |
tgcaccaattgtaaagaatgatccaaatctttatggtccaatttatcataatgtttccatgttcaagaggtattactcaaa |
53054 |
T |
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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 53117 - 53200
Alignment:
| Q |
144 |
gtttctgaaatttcactaatatgaatgtgttttgttttgaatgattttaaaaaccgacatcaaactggccagggttcaactgcc |
227 |
Q |
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| T |
53117 |
gtttctgaaatttcacaaatatgaatgtgttttgttttgaatgattttaaaaaccgacatcaaaccggccagggttcaactgcc |
53200 |
T |
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