View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10085_low_6 (Length: 300)

Name: NF10085_low_6
Description: NF10085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10085_low_6
NF10085_low_6
[»] chr2 (4 HSPs)
chr2 (1-300)||(42213593-42213892)
chr2 (1-288)||(42206772-42207062)
chr2 (1-81)||(42214214-42214294)
chr2 (1-81)||(42214013-42214093)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 42213892 - 42213593
Alignment:
Q  1 aagggttctcagatgtcattgaatctgagagccatccattgtcttcctcgtcaagatttagcaaagagtgccagtaacttgttccgtcaaaatctgaaat 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  42213892 aagggttctcagatatcattgaatctgagagccatccattgtcttcctcgtcaagacttagcaaagagtgcccgtaacttgttccgtcaaaatctgaaat 42213793  T
Q  101 ctcagagaaagcgtcgtaataggtggatgaacaagtactgtggggagaccctaagccgtcagagtagctaagtgcatcatctacagaagttgcatcattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42213792 ctcagagaaagcgtcgtaataggtggatgaacaagtactgtggggagaccctaagccgtcagagtagctaagtgcatcatctacagaagttgcatcattg 42213693  T
Q  201 atattatctgttctttcatttggaatgcttctgttagctaaagaagcattctcttcaggtttaactctgcagccactgaaaaagttgacttttttgctca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42213692 atattatctgttctttcatttggaatgcttctgttagctaaagaagcattctcttcaggtttaactctgcagccactgaaaaagttgacttttttgctca 42213593  T

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Target: chr2; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 42207062 - 42206772
Alignment:
Q  1 aagggttctcagatgtcattgaatctg---agagccatccattgtcttcctcgtcaagatttagcaaagagtgccagtaacttgttccgtcaaaatctga 97  Q
    |||| ||||||| ||||||||||||||   ||| |||  || |||||||||| |||||| ||||||||||||||| |||||| ||||  |||||||||||    
T  42207062 aaggattctcaggtgtcattgaatctgctgagacccaatcaatgtcttcctcttcaagacttagcaaagagtgccggtaactagttctatcaaaatctga 42206963  T
Q  98 aatctcagagaaagcgtcgtaataggtggatgaacaagtactgtggggagaccctaagccgtcagagtagctaagtgcatcatctacagaagttgcatca 197  Q
    |||||| |||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||    
T  42206962 aatctcggagaaaacgtcataataggtggatgaacaagtactatggggagaccctgagccctcagagtagctaagtgcatcatctacagcagttgcatca 42206863  T
Q  198 ttgatattatctgttctttcatttggaatgcttctgttagctaaagaagcattctcttcaggtttaactctgcagccactgaaaaagttga 288  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||| |||||||||||  ||| ||||||| ||  |||||||| ||||    
T  42206862 ttgatattatctcttctttcatttggaatgcttttgttatgtaaagaaacattctcttcatattttactctgctgctgctgaaaaaattga 42206772  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 42214294 - 42214214
Alignment:
Q  1 aagggttctcagatgtcattgaatctgagagccatccattgtcttcctcgtcaagatttagcaaagagtgccagtaacttg 81  Q
    |||||| ||||||  |||||||||||||||||||| ||  ||||||||| |||||| |||| ||||| ||| |||||||||    
T  42214294 aagggtcctcagagatcattgaatctgagagccatgcagagtcttcctcttcaagacttagtaaagaatgcgagtaacttg 42214214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 42214093 - 42214013
Alignment:
Q  1 aagggttctcagatgtcattgaatctgagagccatccattgtcttcctcgtcaagatttagcaaagagtgccagtaacttg 81  Q
    |||| |||||||||  |||||||||||| |||||| ||  ||||||||| |||||| |||| ||||| ||| |||||||||    
T  42214093 aaggattctcagataccattgaatctgaaagccattcagagtcttcctcttcaagacttagtaaagaatgcgagtaacttg 42214013  T

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