View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10085_low_7 (Length: 297)
Name: NF10085_low_7
Description: NF10085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10085_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 10439675 - 10439498
Alignment:
| Q |
11 |
cagagatcggttaacataccattgttcaatccgatggtagaatcctgaacattaaggaaataaagaacaccctcgtaacgaatgtcgtagttagaaatca |
110 |
Q |
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| T |
10439675 |
cagaaatcggttaacataccattgttcaatccgatggtagaatcctgaacattaaggaaataaagaacaccctcgtaacgaatgtcgtagttagaaatca |
10439576 |
T |
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| Q |
111 |
agcttatgaaacaaccaatgtacgattccacgggattcgacgacgaagaacctttggtgctagattgattcgccatga |
188 |
Q |
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| T |
10439575 |
agcttatgaaacaaccaatgtacgattccacgggattcgacgacgaagaacctttggtgctagattgattcgccatga |
10439498 |
T |
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Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 10439507 - 10439434
Alignment:
| Q |
205 |
ttcgcgatgacagagtagaggagaaaataacagcgatgaagaattgaagatggaaggaaaatttgggggaacag |
278 |
Q |
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| T |
10439507 |
ttcgccatgacagagtagaggagaaaataacagcgatgaagaattgaagatggaaggaaaatttgggggaacag |
10439434 |
T |
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