View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10086_high_1 (Length: 559)
Name: NF10086_high_1
Description: NF10086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10086_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Original strand, 19271413 - 19271960
Alignment:
| Q |
1 |
tgagaagatccaaatccgttgggctttggccctcttgttgaaaactttgaaatgagtatttattttaagtgttcactattatactttttcaaggggaatt |
100 |
Q |
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| T |
19271413 |
tgagaagatccaaatccgttgggctttggccctcttgttgaaaactttgaaatgagtatttattttaagtgttcactattatactttttcaaggggaact |
19271512 |
T |
|
| Q |
101 |
cttaccattgataaggttaatcctggaatgaaagggaatgcaatgttgtagttagaggtctatgcaactactacattacgttgttatgcctttcacaatg |
200 |
Q |
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| T |
19271513 |
cttaccattgataaggttaatcctggaatgaaagggaatgcaatgttgtagttagaggtctatgcaactactacattgcgttgttatgcctttcacaatg |
19271612 |
T |
|
| Q |
201 |
cctcttccaccaaaagttgaattctaagtagactaaccgtggaatggtacttaaaattatcaaaacttctaacgatcgttgacgatactctttataaatg |
300 |
Q |
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| T |
19271613 |
cctcttccaccaaaagttgaattctaagtagactaaccgtggaatggtacttaaaattatcaaaaattctaacgatcgttgacgatactctttataaatg |
19271712 |
T |
|
| Q |
301 |
aaaacaaatgaccttcctcatctttaagatgaagatggtgatctggttgacgtaggtttaatatgtgctacatatttatttaatgttgtttaaatcaaac |
400 |
Q |
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| T |
19271713 |
aaaacaaatgaccttcctcatctttaagatgaagatggtgatgtggttgacgtaggtttaatatgtgctacatatttatttaatgttgtttaaatcaaac |
19271812 |
T |
|
| Q |
401 |
ttgtatcaattaaatcattatctcaaccgtaaaatgaagaggaccattaacctctactattatcactaactcaatgttatcaatttagtgcctatttatt |
500 |
Q |
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| T |
19271813 |
ttgtatcaattaaattattatctcaaccgtaaaatgaagaggaccattaacctctactattatcactaactcaatgttatcaatttagtgcctatttatt |
19271912 |
T |
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| Q |
501 |
gcatccttacccttttttcagttggagggatcattgtagcataggtaa |
548 |
Q |
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| T |
19271913 |
gcatccttacccttttttcagttggagggatcattgtagcataggtaa |
19271960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 451
Target Start/End: Complemental strand, 14825092 - 14825007
Alignment:
| Q |
368 |
ctacatatttatttaatgttgtttaaatcaaacttgtatcaattaaatcattatctcaaccgt--aaaatgaagaggaccattaac |
451 |
Q |
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| T |
14825092 |
ctacatatttattttatgttggtttaatcaaactgatatcaatcaaataattatttcaatcgttaaaaataaagatgaccattaac |
14825007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 21708058 - 21708109
Alignment:
| Q |
355 |
ggtttaatatgtgctacatatttatttaatgttgtttaaatcaaacttgtat |
406 |
Q |
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| T |
21708058 |
ggttcaatatgagctacatatttattttttgttgtttaaatcaaactagtat |
21708109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 421
Target Start/End: Complemental strand, 29591541 - 29591452
Alignment:
| Q |
332 |
aagatggtgatctggttgacgtaggtttaatatgtgctacatatttatttaatgttgtttaaatcaaacttgtatcaattaaatcattat |
421 |
Q |
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||||||||||| || |||| || ||||||||| | ||||||||||||| ||||| ||| |||||| || |||||||||| ||||||| |
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| T |
29591541 |
aagatggtgatttgattgatgtcggtttaatacgatgtacatatttattttatgttatttgaatcaatctgatatcaattaagtcattat |
29591452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 426
Target Start/End: Original strand, 3584328 - 3584368
Alignment:
| Q |
386 |
ttgtttaaatcaaacttgtatcaattaaatcattatctcaa |
426 |
Q |
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| T |
3584328 |
ttgttttaatcaaactggtatcaattaaatcattatttcaa |
3584368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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