View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10086_high_2 (Length: 433)
Name: NF10086_high_2
Description: NF10086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10086_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 423
Target Start/End: Complemental strand, 36863807 - 36863401
Alignment:
| Q |
16 |
catacatctgctaactgaaggaaaacacataacaagccagattaaatctccttcnnnnnnnnnnnnngccaaattaaatcttttttaggctaaatacann |
115 |
Q |
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| T |
36863807 |
catacatctgctaactgaaggaaaacacataacaagccaaattaaatctccttcaaaaaaaaaaaaagccaaattaaatcttttttaggctaaatacacc |
36863708 |
T |
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| Q |
116 |
nnnnn-----taaattcccccattagataattaacttgagtgctttataaacttaaacaattgaatcttgta--caatgagtatgagtactacattttgt |
208 |
Q |
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| T |
36863707 |
cccccccccctaaattcccccattagataattaacttgagtgctttataaacttaaacaattgaatcttgtatacaatgagtatgagtactacattttgt |
36863608 |
T |
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| Q |
209 |
tttatactatcaattgatgacaatcaaatttatgtctaacttgtttaggtagctacaagctatattatagtcaaacattttt-atgatttgataatttat |
307 |
Q |
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| T |
36863607 |
tttatactatcaattgatgacaatcaaatttatgtcta---------ggtagctacaagctatattatagtcaaacattttttatgatttgataatttat |
36863517 |
T |
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| Q |
308 |
gattgatggcaatgtaaattttttataccaaattaccaatacataattcatatcaactaattaagtttaaaactatattacctttccatcgtattcttta |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36863516 |
gattgatggcaatgtaaattttttataccaaattaccaatacataatacatatcaactaattaagtttaaaactatattacctttccatcgtattcttta |
36863417 |
T |
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| Q |
408 |
cgggcaaaaatctctg |
423 |
Q |
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| T |
36863416 |
cgggcaaaaatctctg |
36863401 |
T |
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