View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10086_high_6 (Length: 228)
Name: NF10086_high_6
Description: NF10086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10086_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 4758569 - 4758673
Alignment:
| Q |
1 |
acaaagtatgggttttaaattgcagttgcagttgcaatttgtaacaaacctttaattgaagacaaatgcgaacaatgcagctgcaattacgattgcagta |
100 |
Q |
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| T |
4758569 |
acaaagtatgggttttaaattgcagttgcagtctcaatttgtaacaaacctttaattgaagacaaatgcgaacaatgcagctgcaattacgattgcagga |
4758668 |
T |
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| Q |
101 |
tctct |
105 |
Q |
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||||| |
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| T |
4758669 |
tctct |
4758673 |
T |
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Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 4758720 - 4758796
Alignment:
| Q |
152 |
ttacaggttatacaataccaaaaggatggaaggtcctggtttggaatagaggtgttcacatggatcctgaaatttac |
228 |
Q |
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| T |
4758720 |
ttacaggttatacaataccaaaaggatggaaggtcctggtttggaatagaggtgttcacatggatcctgaaatttac |
4758796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 4750413 - 4750481
Alignment:
| Q |
155 |
caggttatacaataccaaaaggatggaaggtcctggtttggaatagaggtgttcacatggatcctgaaa |
223 |
Q |
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| T |
4750413 |
caggttatactataccaaaaggatggaaagtcctggtatggaacagaggtgttcacatggatcctgaaa |
4750481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 4741149 - 4741217
Alignment:
| Q |
155 |
caggttatacaataccaaaaggatggaaggtcctggtttggaatagaggtgttcacatggatcctgaaa |
223 |
Q |
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|||||||||| ||||||||||||||||| |||||| | ||||| ||||||||||||||||||||||||| |
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| T |
4741149 |
caggttatactataccaaaaggatggaaagtcctgatatggaacagaggtgttcacatggatcctgaaa |
4741217 |
T |
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