View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10086_low_6 (Length: 265)

Name: NF10086_low_6
Description: NF10086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10086_low_6
NF10086_low_6
[»] chr6 (14 HSPs)
chr6 (1-255)||(31289542-31289803)
chr6 (3-153)||(26651948-26652106)
chr6 (3-153)||(26757916-26758074)
chr6 (167-254)||(27713873-27713960)
chr6 (167-253)||(26853949-26854035)
chr6 (184-255)||(26631744-26631815)
chr6 (184-255)||(26737719-26737790)
chr6 (167-254)||(26966390-26966477)
chr6 (176-255)||(27422333-27422412)
chr6 (1-104)||(27421300-27421403)
chr6 (167-255)||(26890735-26890823)
chr6 (167-255)||(27651967-27652055)
chr6 (32-109)||(26632634-26632711)
chr6 (32-109)||(26738610-26738687)
[»] chr8 (1 HSPs)
chr8 (176-257)||(29269748-29269829)
[»] scaffold0349 (1 HSPs)
scaffold0349 (167-254)||(17984-18071)
[»] scaffold0003 (2 HSPs)
scaffold0003 (176-255)||(64951-65030)
scaffold0003 (1-104)||(65960-66063)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 31289803 - 31289542
Alignment:
Q  1 actgatgtgagccatatctctgcactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31289803 actgatgtgagccatatctctgcactgccttcaataattcatcattgaaatcattgggaaaatgcaaatatcacagatcttgataacaacctttcaccga 31289704  T
Q  101 gaatatgttg-------tggcaaccatttatcaacatccagtacaggttgctgcagctgtgtttttacacaagaaactgaactggcagagaagtgttttt 193  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31289703 gaatatgttgcactctctggcaaccatttatcaacatccagtacaggttgctgcagctgtgtttttacacaagaaactgaactggcagagaagtgttttt 31289604  T
Q  194 acacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31289603 acacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 31289542  T

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Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 26652106 - 26651948
Alignment:
Q  3 tgatgtgagccata-tctctgcactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgag 101  Q
    |||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||    
T  26652106 tgatgtgaaccataatctctgcactgccttcaataattcatccttgaaatcattggaaaaacgcaaatatcacagatcttcataacatcctttcaccgag 26652007  T
Q  102 aatatgttg-------tggcaaccatttatcaacatccagtacaggttgctgcagctgt 153  Q
    ||| |||||       ||||||||||||||||||||||| |||||||| ||||||||||    
T  26652006 aatctgttgcactctctggcaaccatttatcaacatccaatacaggtttctgcagctgt 26651948  T

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Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 26758074 - 26757916
Alignment:
Q  3 tgatgtgagccata-tctctgcactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgag 101  Q
    |||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||    
T  26758074 tgatgtgaaccataatctctgcactgccttcaataattcatccttgaaatcattggaaaaacgcaaatatcacagatcttcataacatcctttcaccgag 26757975  T
Q  102 aatatgttg-------tggcaaccatttatcaacatccagtacaggttgctgcagctgt 153  Q
    ||| |||||       ||||||||||||||||||||||| |||||||| ||||||||||    
T  26757974 aatctgttgcactctctggcaaccatttatcaacatccaatacaggtttctgcagctgt 26757916  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 27713873 - 27713960
Alignment:
Q  167 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttct 254  Q
    |||||||  ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||| |||||    
T  27713873 aaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 27713960  T

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Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 26854035 - 26853949
Alignment:
Q  167 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttc 253  Q
    |||||||  ||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||    
T  26854035 aaactgacttggcagaaaattgtttttacacaagaataacttattaatcacaagagccatacagtgttgttgctgctacacaagttc 26853949  T

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Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 26631815 - 26631744
Alignment:
Q  184 aagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| ||||||    
T  26631815 aagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgcagctacacaagttctg 26631744  T

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Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 26737790 - 26737719
Alignment:
Q  184 aagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| ||||||    
T  26737790 aagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgcagctacacaagttctg 26737719  T

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Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 254
Target Start/End: Complemental strand, 26966477 - 26966390
Alignment:
Q  167 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttct 254  Q
    |||||||  ||||||  |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |||||    
T  26966477 aaactgatttggcagcaaagtgtttttacacaagaataccttattaatctcaagagccatacagttttgttgctgctacacaagttct 26966390  T

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Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 27422333 - 27422412
Alignment:
Q  176 tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 255  Q
    ||||||| || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  27422333 tggcagaaaactgcttttacacaagaataccttattaattacaagagccatacagtgttgtttctgctactcaagttctg 27422412  T

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Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 27421300 - 27421403
Alignment:
Q  1 actgatgtgagccata-tctctgcactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccg 99  Q
    |||||||||||||||| ||| ||||||||||||||||||||||| | ||||||||| | ||||||||||| |||||| ||||||||||| |||||| | |    
T  27421300 actgatgtgagccataatctatgcactgccttcaataattcatcgtcgaaatcatt-gaaaaacgcaaatttcacagctcttgataacatcctttctctg 27421398  T
Q  100 agaat 104  Q
    |||||    
T  27421399 agaat 27421403  T

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Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 26890823 - 26890735
Alignment:
Q  167 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 255  Q
    |||||||  ||||||| ||||||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||  ||||| ||||||    
T  26890823 aaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttctg 26890735  T

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Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 27651967 - 27652055
Alignment:
Q  167 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 255  Q
    |||||||  ||||||| ||||||||||||||| ||||| |||||||||||||| ||  ||||||||||||| ||||||| || ||||||    
T  27651967 aaactgatttggcagaaaagtgtttttacacatgaataacttattaatcacaaaagttatacagtgttgttgctgctacgcaagttctg 27652055  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 26632711 - 26632634
Alignment:
Q  32 caataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgtt 109  Q
    |||||||||||||| |||||||| | |||||   |||| ||||   ||||||||||| ||||||||||||||| ||||    
T  26632711 caataattcatcatcgaaatcatcgtgaaaaacaaaatttcactactcttgataacatcctttcaccgagaatctgtt 26632634  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 26738687 - 26738610
Alignment:
Q  32 caataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgtt 109  Q
    |||||||||||||| |||||||| | |||||   |||| ||||   ||||||||||| ||||||||||||||| ||||    
T  26738687 caataattcatcatcgaaatcatcgtgaaaaacaaaatttcactactcttgataacatcctttcaccgagaatctgtt 26738610  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 29269748 - 29269829
Alignment:
Q  176 tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctgct 257  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||||||    
T  29269748 tggcagagaagtgtttttacacaagaataacttaataatcacaagagccatacagtgttgttgctgctacacaagttctgct 29269829  T

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Target: scaffold0349 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 254
Target Start/End: Complemental strand, 18071 - 17984
Alignment:
Q  167 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttct 254  Q
    |||||||  ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||| |||||    
T  18071 aaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 17984  T

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Target: scaffold0003 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 65030 - 64951
Alignment:
Q  176 tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 255  Q
    ||||||| || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  65030 tggcagaaaactgcttttacacaagaataccttattaattacaagagccatacagtgttgtttctgctactcaagttctg 64951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 66063 - 65960
Alignment:
Q  1 actgatgtgagccata-tctctgcactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccg 99  Q
    |||||||||||||||| ||| ||||||||||||||||||||||| | ||||||||| | ||||||||||| |||||| ||||||||||| |||||| | |    
T  66063 actgatgtgagccataatctatgcactgccttcaataattcatcgtcgaaatcatt-gaaaaacgcaaatttcacagctcttgataacatcctttctctg 65965  T
Q  100 agaat 104  Q
    |||||    
T  65964 agaat 65960  T

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