View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10087_low_1 (Length: 687)
Name: NF10087_low_1
Description: NF10087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10087_low_1 |
 | |
|
| [»] scaffold0024 (2 HSPs) |
| | |
|
| [»] scaffold0368 (2 HSPs) |
| | |
|
| [»] scaffold0743 (3 HSPs) |
| | |
|
| [»] scaffold0583 (3 HSPs) |
| | |
|
| [»] scaffold0252 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 156; Significance: 2e-82; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 267 - 677
Target Start/End: Complemental strand, 40401026 - 40400586
Alignment:
| Q |
267 |
tgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctat |
366 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |||||| |
|
|
| T |
40401026 |
tgccggagcgctacgcaacaagtcataatgttgcggtgtgagatagcggtgctatagcggcgcaacacttcgtagcagttttgcgatttagaatcgctat |
40400927 |
T |
|
| Q |
367 |
ttcattttaagagaaaatacaaaattgtccttgannnnnnnnnnnnnnnnnngagggtatttttgacattttcatcaaaccctaaaaagttcagcttctc |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40400926 |
ttcattttaagagaaaatacaaaattgtccttg--gtttttttaaaagaaacaagggtatttttgacatttttatcaaaccctaaaaagttcagcttctc |
40400829 |
T |
|
| Q |
467 |
acttccttctttcattcttac------------------gcaaaacgcatattctctttgcttttctgctgttttgtgaaacttcttcacctctgatgta |
548 |
Q |
| |
|
||||||||||| |||||||| |||||| ||| |||||| ||||||||||||||| |||||||||||||||||| || |||| |
|
|
| T |
40400828 |
tcttccttcttttattcttacgcaaaatcgtgtttatctgcaaaatgcaccttctctctgcttttctgctgttctgtgaaacttcttcacctttgctgta |
40400729 |
T |
|
| Q |
549 |
aatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataatctcaaactctgttgtcctgttac--------------tttt |
633 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||||| ||||| |||||||||||| ||||||||| | |||||||||||||| |||| |
|
|
| T |
40400728 |
tatcttcctc-attttgtcgtgtttgctttgttatcctgttatttttttgtttaacaatctcaaaatttgttgtcctgttacttttttgttctagttttt |
40400630 |
T |
|
| Q |
634 |
ttgttattattgattccaaactccattatgctctctctgcttct |
677 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40400629 |
ttgttattattgattccaaactccattatgctctctctgtttct |
40400586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 507 - 638
Target Start/End: Original strand, 13705946 - 13706079
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa |
605 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || |
|
|
| T |
13705946 |
tgcttttctgctgttttgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa |
13706045 |
T |
|
| Q |
606 |
tctc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| |
|
|
| T |
13706046 |
tctcaaaactttgttgtcctgttacttttttgtt |
13706079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 261 - 399
Target Start/End: Original strand, 13705780 - 13705907
Alignment:
| Q |
261 |
gtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaac |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13705780 |
gtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatag-----------cggcgcaacgcttcgtagtggttttgcggtttagaac |
13705868 |
T |
|
| Q |
361 |
cgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13705869 |
cgctatttcattttaagagaaaatacaaaattgtccttg |
13705907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 251 - 399
Target Start/End: Complemental strand, 3103396 - 3103259
Alignment:
| Q |
251 |
cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgc |
350 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
3103396 |
cggccgcacggtgcggtgccagagcgctacgcaacaagccatagcgttgcagtgtgagatagcgg-----------cgcaacgcttcgtagcggttttgc |
3103308 |
T |
|
| Q |
351 |
ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3103307 |
agtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
3103259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 509 - 638
Target Start/End: Complemental strand, 3103218 - 3103087
Alignment:
| Q |
509 |
cttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataatc |
607 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||| |||| |
|
|
| T |
3103218 |
cttttctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgttttctctgttatcctgttatttttttgtttaacaatc |
3103119 |
T |
|
| Q |
608 |
tc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|| |||| | ||| |||||||||||||||||| |
|
|
| T |
3103118 |
tcaaaaccccgttttcctgttacttttttgtt |
3103087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 677
Target Start/End: Complemental strand, 3103077 - 3103033
Alignment:
| Q |
633 |
tttgttattattgattccaaactccattatgctctctctgcttct |
677 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
3103077 |
tttgttattattgattccaaactccattctgctctctctgtttct |
3103033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 677
Target Start/End: Original strand, 13706089 - 13706133
Alignment:
| Q |
633 |
tttgttattattgattccaaactccattatgctctctctgcttct |
677 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
13706089 |
tttgttattattgattccaaactccattctgctctctctgtttct |
13706133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 421 - 479
Target Start/End: Complemental strand, 19163516 - 19163460
Alignment:
| Q |
421 |
gggtatttttgacattttcatcaaaccctaaaaagttcagcttctcacttccttctttc |
479 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | |||||||||| |||||||||||| |
|
|
| T |
19163516 |
gggtatttttgacattttcatcgaaccctaaataattcagcttct--cttccttctttc |
19163460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 17)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 235 - 399
Target Start/End: Complemental strand, 25467934 - 25467770
Alignment:
| Q |
235 |
ccatagtagtcaataccggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgc |
334 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
25467934 |
ccatagtagtcaatagcggccacgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcagtgtgagatagcggcgctatagcggcgcaacgc |
25467835 |
T |
|
| Q |
335 |
ttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25467834 |
ttcgtagtggttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
25467770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 507 - 638
Target Start/End: Original strand, 6600446 - 6600579
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa |
605 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || |
|
|
| T |
6600446 |
tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa |
6600545 |
T |
|
| Q |
606 |
tctc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
6600546 |
tctcaaaactctgttgtcctgttacttttttgtt |
6600579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 507 - 637
Target Start/End: Original strand, 42939137 - 42939269
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa |
605 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| || |
|
|
| T |
42939137 |
tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatattcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa |
42939236 |
T |
|
| Q |
606 |
tctc-aaactctgttgtcctgttacttttttgt |
637 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
42939237 |
tctcaaaactctgttgtcctgttacttttttgt |
42939269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 258 - 399
Target Start/End: Original strand, 42938967 - 42939097
Alignment:
| Q |
258 |
gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag |
357 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
42938967 |
gcggtgcggtgccggagcgctactcaacaagccatagcgttgcggtgtgagatag-----------cggcgcaacgcttcgtagcggttttgcggtttag |
42939055 |
T |
|
| Q |
358 |
aaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42939056 |
aaccgctatttcattttaagagaaaatacaaaagtgtccttg |
42939097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 507 - 638
Target Start/End: Complemental strand, 22339522 - 22339389
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataa |
605 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || |
|
|
| T |
22339522 |
tgcttttcttctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa |
22339423 |
T |
|
| Q |
606 |
tctc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| |
|
|
| T |
22339422 |
tctcaaaactttgttgtcctgttacttttttgtt |
22339389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 237 - 399
Target Start/End: Original strand, 6600249 - 6600403
Alignment:
| Q |
237 |
atagtagtcaataccggccgcgcggtgcggtgc-----cggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaa |
331 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
6600249 |
atagtagtcaatagcggccgcgcggtgcggtgcggtgccggagcgcttcgcaacaagccatagcgttgcggtgtgagatagtgg-----------cgcaa |
6600337 |
T |
|
| Q |
332 |
cgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6600338 |
cgcttcgtagcggttttgcggttt-gaaccgctatttcatttt-agagaaaatacaaaattgtccttg |
6600403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 507 - 635
Target Start/End: Complemental strand, 25467728 - 25467593
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctcta-----ctttgtcgtgtttgctctgttatcatgtta-ttttttgttt |
600 |
Q |
| |
|
||||||||||||||| ||| ||||||||| |||| || |||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
25467728 |
tgcttttctgctgttctgtaaaacttcttaacctttgctgtaaatcttcctctactttactttgtcgtgtttgctctgttatcctgttatttttttgttt |
25467629 |
T |
|
| Q |
601 |
aataatctc-aaactctgttgtcctgttactttttt |
635 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||| |
|
|
| T |
25467628 |
aacaatctcaaaactctgttgtcctgttactttttt |
25467593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 420 - 495
Target Start/End: Complemental strand, 16932421 - 16932346
Alignment:
| Q |
420 |
agggtatttttgacattttcatcaaaccctaaaaagttcagcttctcacttccttctttcattcttacgcaaaacg |
495 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16932421 |
agggtattttttacattttcatcaaatcctaaaaagtttagcttctctcttccttctttcattcttacgcaaaacg |
16932346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 344 - 399
Target Start/End: Complemental strand, 22339617 - 22339562
Alignment:
| Q |
344 |
gttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22339617 |
gttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
22339562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 22339668 - 22339620
Alignment:
| Q |
251 |
cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttg |
299 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22339668 |
cggccgcacggtgcggtgccggagcgctacgcaacaagccatagcgttg |
22339620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 17588155 - 17588208
Alignment:
| Q |
239 |
agtagtcaataccggccgcgcggtgcggtgccggagcgctacgcaacaagccat |
292 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17588155 |
agtagtcaatagcggccccgcggtgcggtgctggagcgctacgcaacaagccat |
17588208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 16932559 - 16932499
Alignment:
| Q |
258 |
gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgc |
318 |
Q |
| |
|
|||||| | |||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16932559 |
gcggtgtgttgccggagcgctacacaattagccatagcgttgcggtgtgagatagcggtgc |
16932499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 16932487 - 16932437
Alignment:
| Q |
349 |
gcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16932487 |
gcggtttggaaccactattacattttaagagaaaatacaaaattgtccttg |
16932437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 677
Target Start/End: Complemental strand, 25467580 - 25467536
Alignment:
| Q |
633 |
tttgttattattgattccaaactccattatgctctctctgcttct |
677 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
25467580 |
tttgttattattgattccaaactccattctgctctctctgtttct |
25467536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 591 - 638
Target Start/End: Complemental strand, 16932264 - 16932217
Alignment:
| Q |
591 |
ttttttgtttaataatctcaaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
16932264 |
ttttttgtttaacaatctcatactctgttgtcctattacttttttgtt |
16932217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 633 - 677
Target Start/End: Original strand, 6600589 - 6600633
Alignment:
| Q |
633 |
tttgttattattgattccaaactccattatgctctctctgcttct |
677 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
6600589 |
tttgttattattgattccaaactccattctgctctcactgtttct |
6600633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 633 - 677
Target Start/End: Complemental strand, 16932207 - 16932163
Alignment:
| Q |
633 |
tttgttattattgattccaaactccattatgctctctctgcttct |
677 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||||| |||| |
|
|
| T |
16932207 |
tttgttattattgattccaaaccccattctggtctctctgtttct |
16932163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 5e-64; HSPs: 16)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 251 - 495
Target Start/End: Original strand, 43904221 - 43904451
Alignment:
| Q |
251 |
cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgc |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||| ||||||| |
|
|
| T |
43904221 |
cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcgg-----------cacaacactttgtagcggttttgc |
43904309 |
T |
|
| Q |
351 |
ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttgannnnnnnnnnnnnnnnnngagggtatttttgacattttcatcaaacccta |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43904310 |
ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg---gttttaaaaaaaaagagagggtatttttgacattttcatcaaacccta |
43904406 |
T |
|
| Q |
451 |
aaaagttcagcttctcacttccttctttcattcttacgcaaaacg |
495 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43904407 |
aaaagttcagcttctctcttccttctttcattcttacgcaaaacg |
43904451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 251 - 399
Target Start/End: Original strand, 42421076 - 42421224
Alignment:
| Q |
251 |
cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgc |
350 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | |||||||||||||||| ||||||||| ||||||| |
|
|
| T |
42421076 |
cggccgcgcggtgcggtgccggagcggtacgcaacaagccataacgttgcggtgtgagatagcagcgctatagcggcgcaacacttcgtagcggttttgc |
42421175 |
T |
|
| Q |
351 |
ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42421176 |
ggtttagaaccgcaatttcattttaagagaaaatacaaaattgtccttg |
42421224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 489 - 638
Target Start/End: Complemental strand, 32754683 - 32754533
Alignment:
| Q |
489 |
caaaacgcatattctctttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgt |
588 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32754683 |
caaaacacatcttctctctgcttttctgctgttctgtgaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgt |
32754584 |
T |
|
| Q |
589 |
tatt-ttttgtttaataatctcaaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32754583 |
tatttttttgtttaacaatctcaaactctgttgtcctgttacttttttgtt |
32754533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 251 - 495
Target Start/End: Complemental strand, 32754929 - 32754702
Alignment:
| Q |
251 |
cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgc |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |
|
|
| T |
32754929 |
cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagata-----------gcggcgcaac-cttcgtagcggttttgt |
32754842 |
T |
|
| Q |
351 |
ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttgannnnnnnnnnnnnnnnnngagggtatttttgacattttcatcaaacccta |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
32754841 |
ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg----gttttaaaaaaaaacaagggtatttttgaca-tttcatcaaacccta |
32754747 |
T |
|
| Q |
451 |
aaaagttcagcttctcacttccttctttcattcttacgcaaaacg |
495 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32754746 |
aaaagttcagcttctctcttccttctttcattcttacgcaaaacg |
32754702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 507 - 638
Target Start/End: Original strand, 42421265 - 42421400
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatttt---ttgtttaat |
603 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||||||| |||||||||| ||||||||||| ||||||||| ||||||| ||||||||| |||||||| |
|
|
| T |
42421265 |
tgcttttctgctgttctgtaaaacttattcacctctgctgtaaatctttctctactttgttgtgtttgctttgttatcctgttattttttgttgtttaac |
42421364 |
T |
|
| Q |
604 |
aatctc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42421365 |
aatctcaaaactctgttgtcctgttacttttttgtt |
42421400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 513 - 615
Target Start/End: Original strand, 43904486 - 43904589
Alignment:
| Q |
513 |
tctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataatctcaa |
611 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||| |||||||| |
|
|
| T |
43904486 |
tctgctgttctgtgaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgttcgctcagttatcctgttatttttttgtttaacaatctcaa |
43904585 |
T |
|
| Q |
612 |
actc |
615 |
Q |
| |
|
|||| |
|
|
| T |
43904586 |
actc |
43904589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 265 - 399
Target Start/End: Complemental strand, 20305562 - 20305416
Alignment:
| Q |
265 |
ggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcgg------------ |
352 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| ||| | ||||||||| ||||||||| |
|
|
| T |
20305562 |
ggtgccggaatgctacgcaacaagctatagcgttgcggtgtgagatagcggcgctatagtggccaatagcttcgtagtggttttgcgggctgggttgcgg |
20305463 |
T |
|
| Q |
353 |
tttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20305462 |
tttagaaccactattacattttaagagaaaatacaaaattgtccttg |
20305416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 265 - 399
Target Start/End: Complemental strand, 21092195 - 21092049
Alignment:
| Q |
265 |
ggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcgg------------ |
352 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| ||| | ||||||||| ||||||||| |
|
|
| T |
21092195 |
ggtgccggaatgctacgcaacaagctatagcgttgcggtgtgagatagcggcgctatagtggccaatagcttcgtagtggttttgcgggctgggttgcgg |
21092096 |
T |
|
| Q |
353 |
tttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21092095 |
tttagaaccactattacattttaagagaaaatacaaaattgtccttg |
21092049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 22894238 - 22894179
Alignment:
| Q |
256 |
gcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcgg |
315 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22894238 |
gcgcggtgcggtgctggagcgctacgcaacaagccataatgttgcggtgtgagatagcgg |
22894179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 429 - 495
Target Start/End: Complemental strand, 22894073 - 22894009
Alignment:
| Q |
429 |
ttgacattttcatcaaaccctaaaaagttcagcttctcacttccttctttcattcttacgcaaaacg |
495 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
22894073 |
ttgacattttcatcaaaccttataaagttcagcttc-ca-ttccttctttcattcttacgcaaaacg |
22894009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 527 - 571
Target Start/End: Complemental strand, 22893802 - 22893758
Alignment:
| Q |
527 |
aaacttcttcacctctgatgtaaatcttcctctactttgtcgtgt |
571 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22893802 |
aaactttttcacctctgctgtaaatcttcctctactttgtcgtgt |
22893758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 677
Target Start/End: Complemental strand, 32754523 - 32754479
Alignment:
| Q |
633 |
tttgttattattgattccaaactccattatgctctctctgcttct |
677 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
32754523 |
tttgttattattgattccaaactccattctgctctctctgtttct |
32754479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 399
Target Start/End: Original strand, 44412001 - 44412053
Alignment:
| Q |
347 |
ttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
||||| |||| |||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
44412001 |
ttgcgttttaaaaccgctattacattttaagagaaaatacacaattgtccttg |
44412053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 633 - 672
Target Start/End: Original strand, 42421410 - 42421449
Alignment:
| Q |
633 |
tttgttattattgattccaaactccattatgctctctctg |
672 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42421410 |
tttgttattattgattccaaactccattattctctctctg |
42421449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 633 - 677
Target Start/End: Original strand, 43904615 - 43904659
Alignment:
| Q |
633 |
tttgttattattgattccaaactccattatgctctctctgcttct |
677 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||| |||| |
|
|
| T |
43904615 |
tttgttattattgattccaaactccattctgctttctctgtttct |
43904659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 22894140 - 22894104
Alignment:
| Q |
353 |
tttagaaccgctatttcattttaagagaaaatacaaa |
389 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
22894140 |
tttagcaccgctattacattttaagagaaaatacaaa |
22894104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 5e-64; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 35768474 - 35768675
Alignment:
| Q |
18 |
aggaagaagcttacgacaaatttgaatgatgtctatattttgattctggcatgc-aatcacattgtgaagctcaaattggtgtttgatactgttatgaca |
116 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35768474 |
aggaagaagcttacgacaaattttaataatgtatatattttgattctggcatgccaattacattgtgaagctcaaattggtgtttgatactgttatgaca |
35768573 |
T |
|
| Q |
117 |
aggtc-aaggtg--------ttattgttgcagaaattttaatttgttcttggtttatttcggtgtttctgtttcgagttttagcttagagtagggatagt |
207 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35768574 |
aggtcaaaggtgttattgacttattgttgcaaaaattttaatttgtttttggtttattttggtgtttctgtttggagttttagcttagagtagggatagt |
35768673 |
T |
|
| Q |
208 |
aa |
209 |
Q |
| |
|
|| |
|
|
| T |
35768674 |
aa |
35768675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 513 - 638
Target Start/End: Original strand, 26628353 - 26628479
Alignment:
| Q |
513 |
tctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataatctcaa |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| | ||| || |
|
|
| T |
26628353 |
tctgctgttttgtgaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttgtcctgttatttttttgtttaacattcttaa |
26628452 |
T |
|
| Q |
612 |
actctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
26628453 |
actctgttgtcctgttacttttttgtt |
26628479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 507 - 638
Target Start/End: Original strand, 23550759 - 23550892
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa |
605 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
23550759 |
tgcttttctgctgttctgtaaaacttattcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaataa |
23550858 |
T |
|
| Q |
606 |
tctc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||| |
|
|
| T |
23550859 |
tctcaaaattctgttgttctgttacttttttgtt |
23550892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 258 - 399
Target Start/End: Original strand, 30220581 - 30220711
Alignment:
| Q |
258 |
gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||| ||||| |||||||| |
|
|
| T |
30220581 |
gcggtgcggtgccggagcgctacgcaacaagccatagtgttgcggtgtgagatagctg-----------cgcaacgcttcgtagcggttttacggtttag |
30220669 |
T |
|
| Q |
358 |
aaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30220670 |
aaccgctatttcattttaagagaaaatacaaaattgtccttg |
30220711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 258 - 495
Target Start/End: Original strand, 26628098 - 26628318
Alignment:
| Q |
258 |
gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag |
357 |
Q |
| |
|
|||||| |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||| |
|
|
| T |
26628098 |
gcggtgtggtgtcggagcgctacacaacaagccatagcgttgctgtgtgagatagcggtgc-----------aacgcttggtagcggttttgcggtttag |
26628186 |
T |
|
| Q |
358 |
aaccgctatttcattttaagagaaaatacaaaattgtccttgannnnnnnnnnnnnnnnnngagggtatttttgacattttcatcaaaccctaaaaagtt |
457 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26628187 |
aactgctatttcattttaagagaaaataccaaattgtccttg------gtttaaaaaaaacaagggtatttttaacattttcatcaaaccctaaaaagtt |
26628280 |
T |
|
| Q |
458 |
cagcttctcacttccttctttcattcttacgcaaaacg |
495 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
26628281 |
cagcttcgctcttccttctttcattcttatgcaaaacg |
26628318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 507 - 638
Target Start/End: Original strand, 30220752 - 30220884
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa |
605 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || |
|
|
| T |
30220752 |
tgcttttctgctgttctgtaaaactt-ttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa |
30220850 |
T |
|
| Q |
606 |
tctc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| |
|
|
| T |
30220851 |
tctcaaaactctgatgtcctgttacttttttgtt |
30220884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 254 - 399
Target Start/End: Original strand, 23550585 - 23550719
Alignment:
| Q |
254 |
ccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggt |
353 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| | ||| ||||||| || |
|
|
| T |
23550585 |
ccgcgcggtgcggtaccggagcgctacgcaacaagccatagtgttgcggtgtgagatag-----------cggcgcaatgcttaggagcggttttgcagt |
23550673 |
T |
|
| Q |
354 |
ttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23550674 |
ttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
23550719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 35764420 - 35764487
Alignment:
| Q |
121 |
caaggtgttattgttgcagaaattttaatttgttcttggtttatttcggtgtttctgtttcgagttttag |
190 |
Q |
| |
|
|||||||||||||| || ||| |||||||| ||||||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
35764420 |
caaggtgttattgt-gccgaagttttaatt-gttcttggtttattttggtgtttatgtttggagttttag |
35764487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 633 - 677
Target Start/End: Original strand, 26628489 - 26628533
Alignment:
| Q |
633 |
tttgttattattgattccaaactccattatgctctctctgcttct |
677 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||| |||| |
|
|
| T |
26628489 |
tttgttattattgattccaaactccattctgctatctctgtttct |
26628533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 638 - 672
Target Start/End: Original strand, 30220899 - 30220933
Alignment:
| Q |
638 |
tattattgattccaaactccattatgctctctctg |
672 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30220899 |
tattattgattccaaactccattctgctctctctg |
30220933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 5e-61; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 251 - 635
Target Start/End: Complemental strand, 35716597 - 35716207
Alignment:
| Q |
251 |
cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgc |
350 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||||||||||||||| ||||||||| | |||||||||||||||| ||||| |
|
|
| T |
35716597 |
cggccgcgcggtgcggtgctggcgcactacgcaacaagccatagcgttgcggtatgagatagcag-----------cgcaacgcttcgtagcgattttgt |
35716509 |
T |
|
| Q |
351 |
ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttgannnnnnnnnnnnnnnnnngagggtatttttgacattttcatcaaacccta |
450 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
35716508 |
ggtttagaactgctatttcactttaagagaaaatacaaaattgtccttggttttaaaaaaaaaca----agggtatttttgacattttcattaaacccta |
35716413 |
T |
|
| Q |
451 |
aaaagttcagcttctcacttccttctttcattcttacgcaaaacg------------------catattctctttgcttttctgctgttttgtgaaactt |
532 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| ||||||||| ||| |||||| ||||||||||||||| ||| |||||| |
|
|
| T |
35716412 |
aaaagttcagcttctctcttccttctttctttcttgcgcaaaacggcgtttatctgcaaaaagcatcttctctctgcttttctgctgttctgtaaaactt |
35716313 |
T |
|
| Q |
533 |
cttcacctctgat--gtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataatctcaaactctgttgtcctgttac |
629 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
35716312 |
cttcacctctacaccgtaaatcttcctctactttgtcgtgtttgctttgttatcctgttatttttttgtttaacaatctcaaactctactgtcctgttac |
35716213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 258 - 399
Target Start/End: Original strand, 34785303 - 34785433
Alignment:
| Q |
258 |
gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||| |
|
|
| T |
34785303 |
gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatag-----------cggcgcaacgcttcgtagcgattttgcagtttag |
34785391 |
T |
|
| Q |
358 |
aaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34785392 |
aaccgctatttcattttaagagaaaatacaaaattgtccttg |
34785433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 513 - 638
Target Start/End: Complemental strand, 28999344 - 28999217
Alignment:
| Q |
513 |
tctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataatctc-a |
610 |
Q |
| |
|
|||||| || ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||| | |
|
|
| T |
28999344 |
tctgcttttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaatctcaa |
28999245 |
T |
|
| Q |
611 |
aactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
28999244 |
aactctgttgtcctgttacttttttgtt |
28999217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 507 - 638
Target Start/End: Original strand, 34785471 - 34785604
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa |
605 |
Q |
| |
|
|||||| |||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| || |
|
|
| T |
34785471 |
tgctttgctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttactctgttatcctgttatttttttgtttaacaa |
34785570 |
T |
|
| Q |
606 |
tctc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| |
|
|
| T |
34785571 |
tctcaaaactctgttgtcctgttactattttgtt |
34785604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 251 - 397
Target Start/End: Complemental strand, 28999520 - 28999385
Alignment:
| Q |
251 |
cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgc |
350 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||| ||||| ||||||| |
|
|
| T |
28999520 |
cggccgtgcggtgcggtgccggagcgctacgcaacaagccataacgttgcggtgtgagatagcag-----------cgcaacgctttgtagcggttttgc |
28999432 |
T |
|
| Q |
351 |
ggtttagaaccgctatttcattttaagagaaaatacaaaattgtcct |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28999431 |
agtttagaaccgctatttcattttaagagaaaatacaaaattgtcct |
28999385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 551 - 638
Target Start/End: Complemental strand, 20655996 - 20655907
Alignment:
| Q |
551 |
tcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataatctc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20655996 |
tcttcctctactttgtcgcgtttgctctgttatcctgttatttttttgtttaacaatctcaaaactctgttgtcctgttacttttttgtt |
20655907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 677
Target Start/End: Complemental strand, 28999207 - 28999163
Alignment:
| Q |
633 |
tttgttattattgattccaaactccattatgctctctctgcttct |
677 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
28999207 |
tttgttattattgattccaaactccattctgctctctctgtttct |
28999163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 677
Target Start/End: Original strand, 34785614 - 34785658
Alignment:
| Q |
633 |
tttgttattattgattccaaactccattatgctctctctgcttct |
677 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
34785614 |
tttgttattattgattccaaactccattctgctctctctgtttct |
34785658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 40119985 - 40119933
Alignment:
| Q |
347 |
ttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
|||||||||| |||||||||| |||| ||||||||| |||||||||||||||| |
|
|
| T |
40119985 |
ttgcggtttaaaaccgctattacattctaagagaaattacaaaattgtccttg |
40119933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 633 - 671
Target Start/End: Complemental strand, 35716194 - 35716156
Alignment:
| Q |
633 |
tttgttattattgattccaaactccattatgctctctct |
671 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35716194 |
tttgttattattgattccaaactccattctgctctctct |
35716156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 40120031 - 40119979
Alignment:
| Q |
251 |
cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggt |
303 |
Q |
| |
|
||||||||| ||||||||| ||| ||| |||||||||||||||||||||||| |
|
|
| T |
40120031 |
cggccgcgctgtgcggtgcgggaccgccgcgcaacaagccatagcgttgcggt |
40119979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 7e-60; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 258 - 399
Target Start/End: Original strand, 14400421 - 14400562
Alignment:
| Q |
258 |
gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
14400421 |
gcggtgcggtgccggagcgctacgcaacaagccatagtgttgcggtgtgagatggtggagctatagcggcgcaacccttcgtagcagttttgcggtttag |
14400520 |
T |
|
| Q |
358 |
aaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14400521 |
aaccgctatttcattttaagagaaaatacaaaattgtccttg |
14400562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 488 - 638
Target Start/End: Original strand, 11194691 - 11194839
Alignment:
| Q |
488 |
gcaaaacgcatattctctttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatg |
587 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11194691 |
gcaaaacgtatcttctctctgcttttctgctgttctgtgaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctg |
11194790 |
T |
|
| Q |
588 |
tta-ttttttgtttaataatctcaaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
||| |||||||||||| |||||||||||| |||||| ||||||||||||| |
|
|
| T |
11194791 |
ttatttttttgtttaacaatctcaaactc---tgtcctattacttttttgtt |
11194839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 507 - 638
Target Start/End: Original strand, 14400601 - 14400734
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa |
605 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| || |
|
|
| T |
14400601 |
tgcttttctgctgttctggaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttactctgttatcctgttatttttttgtttaacaa |
14400700 |
T |
|
| Q |
606 |
tctc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||| |
|
|
| T |
14400701 |
tctcaaaactctattgtcctgttacttttttgtt |
14400734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 255 - 399
Target Start/End: Original strand, 13090688 - 13090821
Alignment:
| Q |
255 |
cgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtt |
354 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
13090688 |
cgcgcggtgcggtgccgaagcgctacgcaacaagccataacattgcagtgtgagatag-----------cggcgcaacgcttcgtagcggttttgcggtt |
13090776 |
T |
|
| Q |
355 |
tagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13090777 |
tagaactgctatttcattttaagagaaaatacaaaattgtccttg |
13090821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 504 - 638
Target Start/End: Original strand, 13090857 - 13090993
Alignment:
| Q |
504 |
ctttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaa |
602 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||| || || ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
13090857 |
ctttgcttttttgctgttctacaaaacttcttcatctttgctgtaaatcttcctctactttgtcgtgtttgctctgttattctgttatttttttgtttaa |
13090956 |
T |
|
| Q |
603 |
taatctc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
13090957 |
caatctcaaaactttgttgtcttgttacttttttgtt |
13090993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 420 - 495
Target Start/End: Original strand, 11194598 - 11194673
Alignment:
| Q |
420 |
agggtatttttgacattttcatcaaaccctaaaaagttcagcttctcacttccttctttcattcttacgcaaaacg |
495 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11194598 |
agggtattttttacattttcatcaaatcctaaaaagtttagcttctctcttccttctttcattcttacgcaaaacg |
11194673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 677
Target Start/End: Original strand, 13091003 - 13091047
Alignment:
| Q |
633 |
tttgttattattgattccaaactccattatgctctctctgcttct |
677 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
13091003 |
tttgttattattgattccaaactccattctgctctctctgtttct |
13091047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 258 - 395
Target Start/End: Complemental strand, 22546970 - 22546833
Alignment:
| Q |
258 |
gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| || |||||||||||||| |
|
|
| T |
22546970 |
gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggcgctatagcagtgcaacgcttcgtggcggttttgcggtttag |
22546871 |
T |
|
| Q |
358 |
aaccgctatttcattttaagagaaaatacaaaattgtc |
395 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22546870 |
aaccgctatttcattttaagagaaactacaaaattgtc |
22546833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 507 - 638
Target Start/End: Complemental strand, 29391538 - 29391405
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataa |
605 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || |
|
|
| T |
29391538 |
tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa |
29391439 |
T |
|
| Q |
606 |
tctc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
29391438 |
tctcaaaactctgttgtcctgttacttttttgtt |
29391405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 236 - 399
Target Start/End: Complemental strand, 29391734 - 29391577
Alignment:
| Q |
236 |
catagtagtcaataccggccgcgcggtgcggtgc-----cggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgca |
330 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
29391734 |
catagtagtcaatagcggccgcgcggtgcggtgcggtgccggagcgctacgcaaaaagccatagcgttgcggtgtgagatagcgg-----------cgca |
29391646 |
T |
|
| Q |
331 |
acgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29391645 |
atgcttcgtagcggttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
29391577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 258 - 399
Target Start/End: Complemental strand, 43959668 - 43959535
Alignment:
| Q |
258 |
gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag |
357 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
43959668 |
gcggtgcggtgctggagcgctacgcaacaagccatagcgttgcggtgtgagatagaagcgctatagcggcgcaaggcttcgta--------gcggtttag |
43959577 |
T |
|
| Q |
358 |
aaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43959576 |
aaccgctatttcattttaagagaaaatacaaaattgtccttg |
43959535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 507 - 638
Target Start/End: Complemental strand, 22546791 - 22546658
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataa |
605 |
Q |
| |
|
||||||||||||||| ||| |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||| || |
|
|
| T |
22546791 |
tgcttttctgctgttctgttaaacttcttcacttctgctgtaaatcttcctctactttgtcgtgtttactctgttatcctgttatttttttgtttaacaa |
22546692 |
T |
|
| Q |
606 |
tctc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
22546691 |
tctcaaaactctgttgtcctgttacttttttgtt |
22546658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 507 - 638
Target Start/End: Original strand, 45224132 - 45224265
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa |
605 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| | ||||| |||||||||||| || |
|
|
| T |
45224132 |
tgcttttctgctgttctgtaaaacttcttcacctctgttgtaaatcttcctctgctttgtcgtgtttgctctgttaccctgttatttttttgtttaacaa |
45224231 |
T |
|
| Q |
606 |
tctc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
45224232 |
tctcaaaactctgttgtcctgttacttttttgtt |
45224265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 506 - 638
Target Start/End: Complemental strand, 43959537 - 43959406
Alignment:
| Q |
506 |
ttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaata |
604 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | |
|
|
| T |
43959537 |
ttgcttttctgctgttctgtaaaacttcttcacctctg---taaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaaca |
43959441 |
T |
|
| Q |
605 |
atctc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43959440 |
atctcaaaactctgttgtcctgttacttttttgtt |
43959406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 258 - 399
Target Start/End: Original strand, 45223966 - 45224096
Alignment:
| Q |
258 |
gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| |||||| ||||||| |
|
|
| T |
45223966 |
gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcagtgtgagatag-----------cggcgcaacgcttcacagcggttttgtggtttag |
45224054 |
T |
|
| Q |
358 |
aaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45224055 |
aaccgctatttcattttaagagaaaatacaaaattgtccttg |
45224096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 261 - 399
Target Start/End: Complemental strand, 16939642 - 16939519
Alignment:
| Q |
261 |
gtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaac |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
16939642 |
gtgcggtgccggagcgctacgcaacaagccatagcattgcagtgtgagatagcggtgatata-------aacgcttcgtagc--------ggtttagaac |
16939558 |
T |
|
| Q |
361 |
cgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16939557 |
cgctatttcattttaagagaaaatacaaaattgtccttg |
16939519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 261 - 399
Target Start/End: Complemental strand, 17010307 - 17010184
Alignment:
| Q |
261 |
gtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaac |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
17010307 |
gtgcggtgccggagcgctacgcaacaagccatagcattgcagtgtgagatagcggtgatata-------aacgcttcgtagc--------ggtttagaac |
17010223 |
T |
|
| Q |
361 |
cgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17010222 |
cgctatttcattttaagagaaaatacaaaattgtccttg |
17010184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 504 - 638
Target Start/End: Complemental strand, 16939487 - 16939353
Alignment:
| Q |
504 |
ctttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttattttt-tgtttaa |
602 |
Q |
| |
|
|||||||||| || |||| ||| ||||| |||||||||| |||||||||||||||||||||||||||||| || ||||| |||||||||| ||||||| |
|
|
| T |
16939487 |
ctttgcttttttgatgttctgtataactttttcacctctgttgtaaatcttcctctactttgtcgtgtttg--ctattatcctgttatttttgtgtttaa |
16939390 |
T |
|
| Q |
603 |
taatctca-aactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
16939389 |
caatctcagaactctgttgtcctgttacttttgtgtt |
16939353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 504 - 638
Target Start/End: Complemental strand, 17010152 - 17010018
Alignment:
| Q |
504 |
ctttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttattttt-tgtttaa |
602 |
Q |
| |
|
|||||||||| || |||| ||| ||||| |||||||||| |||||||||||||||||||||||||||||| || ||||| |||||||||| ||||||| |
|
|
| T |
17010152 |
ctttgcttttttgatgttctgtataactttttcacctctgttgtaaatcttcctctactttgtcgtgtttg--ctattatcctgttatttttgtgtttaa |
17010055 |
T |
|
| Q |
603 |
taatctca-aactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
17010054 |
caatctcagaactctgttgtcctgttacttttgtgtt |
17010018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 677
Target Start/End: Original strand, 45224275 - 45224319
Alignment:
| Q |
633 |
tttgttattattgattccaaactccattatgctctctctgcttct |
677 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
45224275 |
tttgttattattgattccaaactccattctgctctctctgtttct |
45224319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 15556151 - 15556081
Alignment:
| Q |
18 |
aggaagaagcttacgacaaatttgaatga-tgtctatattttgattctggcatgcaatcacattgtgaagc |
87 |
Q |
| |
|
|||||||||||| |||||||||| ||| | |||||||||||| || ||||||||||| |||||||| |||| |
|
|
| T |
15556151 |
aggaagaagcttccgacaaattttaattaatgtctatattttcatactggcatgcaaccacattgtaaagc |
15556081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 507 - 638
Target Start/End: Original strand, 157201 - 157334
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa |
605 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || |
|
|
| T |
157201 |
tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaaaaa |
157300 |
T |
|
| Q |
606 |
tctc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| |
|
|
| T |
157301 |
tctcaaaactttgttgtcctgttacttttttgtt |
157334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 258 - 399
Target Start/End: Original strand, 157030 - 157160
Alignment:
| Q |
258 |
gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag |
357 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||| ||| ||| |
|
|
| T |
157030 |
gcggtgcggttcctgagcgctacgcaacaagccatagcgttgcggtgtgagatagtgg-----------cgcaacgcttcgtagcggttttgaggtctag |
157118 |
T |
|
| Q |
358 |
aaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
157119 |
aaccgctatttcattttaagagaaaatacaaaattgtccttg |
157160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 507 - 638
Target Start/End: Complemental strand, 42364166 - 42364033
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataa |
605 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || |
|
|
| T |
42364166 |
tgcttttctgctgttctgtaaaactttttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa |
42364067 |
T |
|
| Q |
606 |
tctc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
42364066 |
tctcaaaactctgttgtcctgttacttttttgtt |
42364033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 507 - 638
Target Start/End: Original strand, 11276090 - 11276223
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa |
605 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| |||| |||||||| ||||| ||||| |||||||||||| || |
|
|
| T |
11276090 |
tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctacttcgtcgcatttgctctattatcttgttatttttttgtttaacaa |
11276189 |
T |
|
| Q |
606 |
tctca-aactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||| |
|
|
| T |
11276190 |
tctcataactctgttgttctgttacttttttgtt |
11276223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 263 - 399
Target Start/End: Complemental strand, 42364325 - 42364208
Alignment:
| Q |
263 |
gcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaaccg |
362 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
42364325 |
gcggtgccggagcgctacacaacaatccatagcgttgcggtgtgagatagcgg-----------cgcaacgcttcctagc--------ggtttagaaccg |
42364245 |
T |
|
| Q |
363 |
ctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42364244 |
ctatttcattttaagagaaaatacaaaattgtccttg |
42364208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 11275954 - 11276006
Alignment:
| Q |
251 |
cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggt |
303 |
Q |
| |
|
|||||| || |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11275954 |
cggccgtgcagtgcggtgccggagtgctacgcaacaagccatagcgttgcggt |
11276006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 11276006 - 11276051
Alignment:
| Q |
354 |
ttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
11276006 |
ttagaaccgctatttcgtttcaagagaaaatacaaaattgtccttg |
11276051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0368 (Bit Score: 93; Significance: 6e-45; HSPs: 2)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 507 - 637
Target Start/End: Original strand, 4694 - 4826
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa |
605 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| || |
|
|
| T |
4694 |
tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatattcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa |
4793 |
T |
|
| Q |
606 |
tctc-aaactctgttgtcctgttacttttttgt |
637 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
4794 |
tctcaaaactctgttgtcctgttacttttttgt |
4826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0368; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 258 - 399
Target Start/End: Original strand, 4524 - 4654
Alignment:
| Q |
258 |
gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag |
357 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
4524 |
gcggtgcggtgccggagcgctactcaacaagccatagcgttgcggtgtgagatag-----------cggcgcaacgcttcgtagcggttttgcggtttag |
4612 |
T |
|
| Q |
358 |
aaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4613 |
aaccgctatttcattttaagagaaaatacaaaagtgtccttg |
4654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0743 (Bit Score: 83; Significance: 6e-39; HSPs: 3)
Name: scaffold0743
Description:
Target: scaffold0743; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 251 - 399
Target Start/End: Original strand, 2733 - 2870
Alignment:
| Q |
251 |
cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgc |
350 |
Q |
| |
|
||||||||||| ||| || |||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
2733 |
cggccgcgcggagcgttgtcggagcgctatgcaacaagccatagcgttgcagtgtgagatag-----------cggcgcaaggcttcgtagcggttttgc |
2821 |
T |
|
| Q |
351 |
ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2822 |
ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg |
2870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0743; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 530 - 638
Target Start/End: Original strand, 2902 - 3004
Alignment:
| Q |
530 |
cttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttattttttgtttaataatctc-aaactctgttgtcctgtta |
628 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
2902 |
cttcttcatctatgctgtaaatcttcctctactttgtcgtgtttgctctgttat-------ttttttgtttaacaatctcaaaactttgttgtcctgtta |
2994 |
T |
|
| Q |
629 |
cttttttgtt |
638 |
Q |
| |
|
|||||||||| |
|
|
| T |
2995 |
cttttttgtt |
3004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0743; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 633 - 677
Target Start/End: Original strand, 3014 - 3058
Alignment:
| Q |
633 |
tttgttattattgattccaaactccattatgctctctctgcttct |
677 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
3014 |
tttgttattattgatttcaaactccattctgctctctctgtttct |
3058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0583 (Bit Score: 78; Significance: 6e-36; HSPs: 3)
Name: scaffold0583
Description:
Target: scaffold0583; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 507 - 638
Target Start/End: Original strand, 5245 - 5378
Alignment:
| Q |
507 |
tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa |
605 |
Q |
| |
|
||||||| |||| || ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| || |
|
|
| T |
5245 |
tgcttttttgctattctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcttgtttgctctgttatcctgttatttttttgtttaacaa |
5344 |
T |
|
| Q |
606 |
tctc-aaactctgttgtcctgttacttttttgtt |
638 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
5345 |
tctcaaaactatgttgtcttgttacttttttgtt |
5378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0583; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 270 - 399
Target Start/End: Original strand, 5089 - 5206
Alignment:
| Q |
270 |
cggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttc |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || |||||||||||||||| |||||| |||||||| |
|
|
| T |
5089 |
cggagcgctacgcaacaagccatagcgttgcagtgtgagatag-----------cggcgcaacggtttgtagctgttttgcggtctagaactgctatttc |
5177 |
T |
|
| Q |
370 |
attttaagagaaaatacaaaattgtccttg |
399 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
5178 |
attttaa-agaaaatacaaaattgtccttg |
5206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0583; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 677
Target Start/End: Original strand, 5388 - 5432
Alignment:
| Q |
633 |
tttgttattattgattccaaactccattatgctctctctgcttct |
677 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
5388 |
tttgttattattgattccaaactccattctgctctctctgtttct |
5432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 419 - 494
Target Start/End: Complemental strand, 18256 - 18179
Alignment:
| Q |
419 |
gagggtatttttgacattttcatcaaaccctaaaaagttcagcttctc--acttccttctttcattcttacgcaaaac |
494 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||| |
|
|
| T |
18256 |
gagggtatttttgacagtttcatcaaaccctaaaaagttcagtttctcttccttctttcattcattcttacgcaaaac |
18179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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