View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10087_low_2 (Length: 419)
Name: NF10087_low_2
Description: NF10087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10087_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 7 - 409
Target Start/End: Original strand, 388868 - 389274
Alignment:
| Q |
7 |
cctgtgatgttgttgcctctgacagaattggtgaagctatgaatgtcatgatttgtgatggatattttggaagcaatgtgtgaagatgatgataatgtga |
106 |
Q |
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| T |
388868 |
cctgtgatgttgttgcctctgacagcattggtgaagctatgaatgtcatgatttgagatggatattttggaagcaatgtgtgaagatgatgataatgtga |
388967 |
T |
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| Q |
107 |
ggagaagagtagtgaagagaaatgtgaaggagtatctgagtgaaaggaacatgttgtggttagttct----ttctttctttggaggcacagagaaaagaa |
202 |
Q |
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| T |
388968 |
ggagaagagtagtgaagagaaatgtgaaggagtatctgagtgaaaggaacatgttgtggttagttctttctttctttctttggaggcacagagaaaagaa |
389067 |
T |
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| Q |
203 |
atagaaagtaagcttccatacaaagcaatatataaagggtcaactttattcaacaagatttaattaactaatgattataaccattttgaaacatttgcat |
302 |
Q |
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| T |
389068 |
atagaaactaagcttccatacaaagcaatatataaagggtcaactttattcaacaagatttaattaactaatgattataaccattttgaaacatttgcat |
389167 |
T |
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| Q |
303 |
atgattaataagactaagctccaagctaaacaaatattatttaatagtatggaagaaattgaaaagtgggtaagttaagaaatcccttgttgacaaatta |
402 |
Q |
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| T |
389168 |
atgattaataagactaagctccaagctaaacaaatattatttaatagtatggaagaaattgaaaagtggataagttaagaaatcccttgttgacaaatta |
389267 |
T |
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| Q |
403 |
atctgtg |
409 |
Q |
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| T |
389268 |
atctgtg |
389274 |
T |
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