View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10087_low_3 (Length: 279)
Name: NF10087_low_3
Description: NF10087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10087_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 41630359 - 41630612
Alignment:
| Q |
8 |
ttggtggtcacaagagatctcatctcatgatcccttcttcatcaacttccactgctaatgttaacgttaatgttaatgttaatgttaatcctactgctgc |
107 |
Q |
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| T |
41630359 |
ttggtggtcacaagagatctcatctcatgatcccttcttcatcaacttccactgctaat------------------gttaatgttaatcctactgctgc |
41630440 |
T |
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| Q |
108 |
tagattcaaagagagtttcatagatctcaatatgccagctccacttgaagaagaagatgatcttagtgttgtttctgatgcctaattgtgtggct----- |
202 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41630441 |
tagattcaaagacagtttcatagatctcaatatgccagctccacttgaagaagaagatgatcttagtgttgtttctgatgcctaattgtgtggctatgga |
41630540 |
T |
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| Q |
203 |
-atggaataattaatattggttaattaattattagctgttaatttgttgggattgggtaattaggtagattg |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41630541 |
aatggaataattaatattggttaattaattattagctgttaatttgttgggattgggtaattaggtagattg |
41630612 |
T |
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