View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10087_low_4 (Length: 245)
Name: NF10087_low_4
Description: NF10087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10087_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 47731199 - 47731415
Alignment:
| Q |
12 |
cagagagaggaagaac-tgacccattcatagaaatgtagctcattctgcatatgatgagacttttcttcattttgtgtgtgtgattgaacccattctaag |
110 |
Q |
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| T |
47731199 |
cagaaagaggaagaacctgacccgttcatagaaatgtagcccattctgcatatgatgagacttttcttcattgtgtgtgtgtgattgaacccattctaag |
47731298 |
T |
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| Q |
111 |
cacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgacgacgctataaattggatcaagaagagggtgatggggccttactatttcc |
210 |
Q |
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| T |
47731299 |
cacttgtggcagcaagcaggatttaatcaatctgattttttctctaacgacgacactataaattggatcaagaacagggtgatggggccttactatttcc |
47731398 |
T |
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| Q |
211 |
tttttgcagcaacaatt |
227 |
Q |
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| T |
47731399 |
tttttgcagcaacaatt |
47731415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 62 - 223
Target Start/End: Complemental strand, 50823520 - 50823362
Alignment:
| Q |
62 |
atgatgagacttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgac |
161 |
Q |
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| T |
50823520 |
atgatgagacttttcttcatt--gtgtgcgtgattgcacccattctaagcacttgtggcagcaagcaggttttaatcaatctgattttttctctaatgag |
50823423 |
T |
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| Q |
162 |
gacgctataaattggatcaagaagagggtgatggggccttactatttcctttttgcagcaac |
223 |
Q |
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| T |
50823422 |
gatgctataaattggatcaagaatggagtgat-gacccttaccctttcctttttgcagcaac |
50823362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 71 - 223
Target Start/End: Complemental strand, 26334526 - 26334376
Alignment:
| Q |
71 |
cttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgacgacgctata |
170 |
Q |
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| T |
26334526 |
cttttcttca--ttatgtgtgtgattgcacccattctaaacacttgtggtagtaggccatatttaatcaatatgaccttttctccaatgaagacgctata |
26334429 |
T |
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| Q |
171 |
aattggatcaagaagagggtgatggggccttactatttcctttttgcagcaac |
223 |
Q |
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| T |
26334428 |
aattggatcaagaatagggtgatgggccctcactctttcctttttgcagcaac |
26334376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 227
Target Start/End: Original strand, 24873567 - 24873730
Alignment:
| Q |
62 |
atgatgagacttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgac |
161 |
Q |
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| T |
24873567 |
atgatgagacttttcttcatt--gcgtgcgtgatagcacccattctaaacatttgcggcaacatgtcgaatttaatcaagctgattttt-ctccaattaa |
24873663 |
T |
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| Q |
162 |
gacgctataaattggatcaagaa-gagggtgatggggccttactatttcctttttgcagcaacaatt |
227 |
Q |
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| T |
24873664 |
gatgctataaattggaccaaggatgggggtgatgggcccttactctttcctttttgcagcaacaatt |
24873730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 43709297 - 43709260
Alignment:
| Q |
190 |
tgatggggccttactatttcctttttgcagcaacaatt |
227 |
Q |
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| T |
43709297 |
tgatgggcccttactatttcctttttgcagcaacaatt |
43709260 |
T |
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