View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10088_high_1 (Length: 516)
Name: NF10088_high_1
Description: NF10088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10088_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 3 - 501
Target Start/End: Original strand, 5022017 - 5022505
Alignment:
| Q |
3 |
tcaagaactattcaaatttcgtcatgctttacttcaaaatgtgattgatggagcttttggagttctcaagaaaagatttccgattacaactggtgacaat |
102 |
Q |
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| T |
5022017 |
tcaagaactattcaaatttcgtcatgctttacttcaaaatgtgattgatggagcttttggagttctcaagaaaagatttccgattacaactggtgacaat |
5022116 |
T |
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| Q |
103 |
gaatcatatttttcaattcgaaccatgacacgtataatcagtgcttgttgtatcttgcacaacttccttatgggcattgacattgatgaacaaataattg |
202 |
Q |
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| T |
5022117 |
gaatcatatttttcaattcgaaccatgacacgtataatcagtgcttgttgtatcttgcacaacttccttatgggcattgacattgatgaacaaataattg |
5022216 |
T |
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| Q |
203 |
ctgaagtagatcgtgaattgctacatgacaaaagtcgatacatatcaaagaaactgaaacttgaagtggactctgaagaaaaaccgagttcaagtaagaa |
302 |
Q |
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| T |
5022217 |
ctgaagtagatcgtgaattgctacatgacaaaagtcgatacatatcaaagaaacggaaacttgaagtggactctgaagaaaaaccgagttcaagtaagaa |
5022316 |
T |
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| Q |
303 |
aattgctttggaaatgtggaatgcttatgaagtataatatgctgaatgtatatctcatgtttctggctgttggttttacatattttgtttgtgtcagcat |
402 |
Q |
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| T |
5022317 |
aattgctttggaaatgtggaatgcttatgaagtat----------atgtatatctcatgtttctggctgttggttttacatattttgtttgtgtcagcat |
5022406 |
T |
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| Q |
403 |
tttgaacacggatttcatgtgtataaagtgacaaaattattcaggcccaaactgaactttggtccagcacaaccctaaaaaattggtagatgcagggag |
501 |
Q |
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| T |
5022407 |
tttgaacacggatttcatgtgtataaagtgacaaaattattcaggcccaaactgaactttggtccagcacaaccctaaaaaattggtagatgcagggag |
5022505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 5019430 - 5019511
Alignment:
| Q |
133 |
cgtataatcagtgcttgttgtatcttgcacaacttccttatgggcattgacattgatgaacaaataattgctgaagtagatc |
214 |
Q |
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| T |
5019430 |
cgtataatcattgcttgttgtgttttgcataactttcttatggaagttgacattgacgaacaaatgattgctgaagtagatc |
5019511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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